| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1893 |
|---|
| Symbol | |
|---|
| ID | 5670295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 2271654 |
|---|
| End bp | 2272331 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641240815 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_001506237 |
|---|
| Protein GI | 158313729 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.333222 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCTGGG TGGCTAGGCT CCTGTTCATG CCGCCCGCCG CGCCCAACGA GCCCGCGTCT
GAGCCCGAGC CCGTGTCTGT GTCCGAGCCC GAACCCCGCT CCGCCGGTGC ACCGGCGGAG
CCCGTCGCCG CGCCGCCGGG CGCGGACCCC AGGTGGGGCG ACCTGCGCCG CAAGACCGTG
ACCTGGTACG ACCCGGCCGC CAGCGCGCGG TCGAGCCTGG CCATGTCCGG CCTGGAGTTC
CTGCGGGCGA TGGTCGACGG CACCGTCCCG CCCCCGCCGA TCTCGCGGGT GTTCGACTTC
CGTCCGGTCT CGGTGGAGGT CGGCGACGTG GTCTTCACCT GCGAGCCGGA CGAGTCCGCG
TACAACCCCA TCGGACTCGT CCACGGTGGC CTCGTCTGCA CGCTGCTCGA CACCGCGACG
GCCTGCGCGG TGCACACGAC GCTGGCGGCC GGTGCCGCCT ACACCTCGCT GGAGATCAAG
ATCAGCTACG TGCGCCCGGT CCACGTTCTC CCCGGACGGG CGAACACCCT GACCGCGCAC
GGCTGGGTCA CCCGTCCCGG CCGCCGGGCC GCGTTCGCGC AGGGCGACGT CCGCGACGCG
CAGGGCCGGG TCGTGGCCAC CGCGAGCAGC ACCTGCCTCG TCATGACCCC CGGGGACGGA
GCGGGTTCCA CGCCCTGA
|
|---|
| Protein sequence | MVWVARLLFM PPAAPNEPAS EPEPVSVSEP EPRSAGAPAE PVAAPPGADP RWGDLRRKTV
TWYDPAASAR SSLAMSGLEF LRAMVDGTVP PPPISRVFDF RPVSVEVGDV VFTCEPDESA
YNPIGLVHGG LVCTLLDTAT ACAVHTTLAA GAAYTSLEIK ISYVRPVHVL PGRANTLTAH
GWVTRPGRRA AFAQGDVRDA QGRVVATASS TCLVMTPGDG AGSTP
|
|---|
| |