| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1875 |
|---|
| Symbol | |
|---|
| ID | 5670277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 2253088 |
|---|
| End bp | 2254782 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641240797 |
|---|
| Product | TIR protein |
|---|
| Protein accession | YP_001506219 |
|---|
| Protein GI | 158313711 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.399913 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCGG GGGACTGCGA CAACGGGGGC GCGGTGGCGA ATGTCGCCGG GACGGACTTC
TTCGTCTCGT ACGCCACCGC CGACGAGGCG TGGGCGGAGT GGATCGCCTG GAACCTCGAG
GAGGCCGGGT ACAGCACCCG CATCCAGGTC TGGGATTTCG CTGTCGGATC TCATTTCGTT
CATGAAATGC ACCGGGCGGC AGGAGGCGCG GCCAGGACGG TTGCCGTGCT CTCCGCCGAG
TATCTCGCTT CGGCCTACGC CGAGGCCGAA TGGGCGGCGG CCTGGGCGCG TGACCCGATC
GGCATCCATC GCCGGCTGCT TGTTCTCCGG GTCGGCGAGT GCGAACAACC CGGCCTGCTG
CGACAGGTCG TCGGGACGGA CCTGTTCAAC GTCGACGAGA ACACCGCCCG GGAGCGCGTG
CTGGCGGCGG CCCGCGGACA GCGGCACAAG CCGAAGTCAC CACCGACCTT CCCCGGCAGG
CCCGCCACGG CGACGGCGTC CGCGAGTACG CCCACACCGG CACGACGGCC GCCTCTGGCA
CGGCCGAAGT TTCCCGGCGG CCGGGTACGG CGCGGACCGT GGCCGGTCCC ACGGGTGCTG
ATCGCGCTGG TGCTGCTCGT GGCTCTCACC GGCGGTGGAA TTGTGGGCAC CGGCGCCCTC
AAGAACTGGC TGGGCGGTTC CGGCCCGTCA CCGTATGCCG ACACCCGCTG TACCGGCGTG
CAGGTACTGG GCGGCCTGGC CGGTTCGCCC TACAGCCTGT ACGCCCAGAC GCTCGCCGAC
CTTATCAACG ATAAGGTGCT CAACGGCGGC AACGACTGGT CGGCCACCGC TGATCTGAGC
TTGTCGGGGA CATCCGCCAG CCTGCGCACC CTCGCCGCGG ACCCGAAGTG CACCCTCAGC
CTCGCCCAGC TCAACGTCCC GGTGGACGCG GAACGCGGGC TGGGGGATTT CCGTCCGGAA
AACGGCGGTC CCATCGCCGG TCTCCGCTAC GTCGGACAGA TCTACTACGA CATGGTGCAC
CTCATCGTGC CGCCCGACTC GCCCATCAGT GGACTCGTCG ACCTGTGTGG GAAGCGGGTT
CTCACCGGAC GGGACAGATC GGGCACCAAC CAGATCAGCA CTGTGCTCAT CCGGTACGTG
CAGGACACCT GGAACTGCAA GGTGGACAGC AGCCTCGACG AGGGGCTCAA GGCGGCGCTG
CCACGACTGG ATCCATCCTC GACGGCCCGG GTGGACGCCG TCTTCTGGGC GGCCGGTGCC
CCGACGAAGC TGATCAGCGA CTACCTCGCA AAGGGGCACA TGATCAGGCT CGTCCCGCTG
AACGACGGTC GCGTCGCCGT CGCCAAGGAA TGGTCCACCG TCTACCCGGA CGTGAGCCAG
CCATTCGTGG CACTGCCGCT CGGCCCGGAA TATCCGGGGG TGGCCAAGGT CGGCACCTTC
GGAACGCCGA ACGGCGTGGT CGCGATGAAA TCGACGGACC GGCCGCTCGT CGCCTTTGTC
GCGCGGATGC TCCAGGAGCG GAGGAAGGAC TTCGAGCATG ACCTGTGGCC GGCGCACCCA
CCGGGTTGGT TTCCCACCCC GTGGTCGTTC GCCGATTCCG GTCTGTGTCA GGCGGTCCCG
CTGCACGACG CGGCCTACAA GGCGTACCTC CAGGCCCCGG ACGGGCAGGC GCCCTCCGGA
TGCCGGGTCG GCTGA
|
|---|
| Protein sequence | MASGDCDNGG AVANVAGTDF FVSYATADEA WAEWIAWNLE EAGYSTRIQV WDFAVGSHFV
HEMHRAAGGA ARTVAVLSAE YLASAYAEAE WAAAWARDPI GIHRRLLVLR VGECEQPGLL
RQVVGTDLFN VDENTARERV LAAARGQRHK PKSPPTFPGR PATATASAST PTPARRPPLA
RPKFPGGRVR RGPWPVPRVL IALVLLVALT GGGIVGTGAL KNWLGGSGPS PYADTRCTGV
QVLGGLAGSP YSLYAQTLAD LINDKVLNGG NDWSATADLS LSGTSASLRT LAADPKCTLS
LAQLNVPVDA ERGLGDFRPE NGGPIAGLRY VGQIYYDMVH LIVPPDSPIS GLVDLCGKRV
LTGRDRSGTN QISTVLIRYV QDTWNCKVDS SLDEGLKAAL PRLDPSSTAR VDAVFWAAGA
PTKLISDYLA KGHMIRLVPL NDGRVAVAKE WSTVYPDVSQ PFVALPLGPE YPGVAKVGTF
GTPNGVVAMK STDRPLVAFV ARMLQERRKD FEHDLWPAHP PGWFPTPWSF ADSGLCQAVP
LHDAAYKAYL QAPDGQAPSG CRVG
|
|---|
| |