| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1837 |
|---|
| Symbol | thiH |
|---|
| ID | 5670239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 2206156 |
|---|
| End bp | 2207322 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641240758 |
|---|
| Product | thiamine biosynthesis protein ThiH |
|---|
| Protein accession | YP_001506181 |
|---|
| Protein GI | 158313673 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1060] Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes |
|---|
| TIGRFAM ID | [TIGR02351] thiazole biosynthesis protein ThiH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.151757 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.173638 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGCC CGGCAGGGCT GTTCGCCCGC GAGCTCGCCG CGCTCGACAT CCCGGCGCTC
GCCCGTGTCT CGGTCGAGGC CGACGAGGCG CGGGTCGACG CCGTCCTGCG CCGGGCCGTC
GCTGCCGGGC GGCCCGACGC CGGCGGCCGG CTCGACCTCG CCGACCTCGC CGTCCTGCTG
TCGCCGGCCG CGACCGGGCG GCTGGAGGAG CTGGCGCAGG CGGCGCGGGA GACGACGCTG
CGCCGGTTCG GCCGGGCGGT GCGGCTGTTC GCCCCGCTGT ACGTGTCGAA CGCCTGCCTG
TCGTCCTGCA CCTACTGCGG GTTCGCCAAG GGGCTGGAGG TGGCCCGGCG CACCCTGACG
GTCGACGAAG CCGAGGCCGA GGCACGCCTG CTGGCCGACC GCGGCTTCCG GCACATCCTG
CTGGTCTCCG GGGAGCACCG CGTCGAGGTC TCCGCCGGGT ACCTGGTGGA CGTCGTCGAG
CGGCTGCGAC CGTTCGTCCC CTCGATCTCG GTGGAGACCC AGACCTGGTC GGACGACACC
TACAGCCGGC TGGTCGTGGC CGGGCTCGAC GGCGTCGTCC ACTACCAGGA GACCTACGAC
CGGGAGCGCT ACGCGCAGGT GCACGTGGCC GGGTGGAAGC GCGACTACGA CCGCCGGCTG
TCCTCCTTCG AGCGGGCGGC CCGCGCCGGC GCCCGCCGTC TGGGCCTCGG CGTCCTGCTC
GGCCTGGCGC CGGACTGGCG GGCCGACGTC CTCGCGCTCG CCGCGCACGC CTCGTTCCTC
GCCCGCCGCT TCTGGCGGAC GGAGGTCTCG GTGGCGCTGC CGAGGATCAA GCCGAGCGCC
AGTGGCTTCC CACCGACCGT CGTCGTCGGC GACGCCGAGT TCGTCCAGGC GCACGCGGCG
CTGCGGCTGT TCGAACCGGA CGCGGCGATC TCGCTGTCGA CCCGCGAGCC GGCGGCCCTG
CGTGACGGCC TGGTCCGCAT CGCGGTGACC ACGATGAGCG CCGGCTCGTC CACCGAGCCA
GGTGGGTACG GGCGGCCCGG GACGGCGCAG GAGCAGTTCT CCATCTCCGA CGAGCGATCC
CCGGCGGACG TCGCCGCGAT GCTCGTCGGC GCCGGCTACG AGCCTGTCTG GAAGGACGCG
TTCCCGCTGG TCGACGCCGC CGGCTGA
|
|---|
| Protein sequence | MASPAGLFAR ELAALDIPAL ARVSVEADEA RVDAVLRRAV AAGRPDAGGR LDLADLAVLL
SPAATGRLEE LAQAARETTL RRFGRAVRLF APLYVSNACL SSCTYCGFAK GLEVARRTLT
VDEAEAEARL LADRGFRHIL LVSGEHRVEV SAGYLVDVVE RLRPFVPSIS VETQTWSDDT
YSRLVVAGLD GVVHYQETYD RERYAQVHVA GWKRDYDRRL SSFERAARAG ARRLGLGVLL
GLAPDWRADV LALAAHASFL ARRFWRTEVS VALPRIKPSA SGFPPTVVVG DAEFVQAHAA
LRLFEPDAAI SLSTREPAAL RDGLVRIAVT TMSAGSSTEP GGYGRPGTAQ EQFSISDERS
PADVAAMLVG AGYEPVWKDA FPLVDAAG
|
|---|
| |