| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1782 |
|---|
| Symbol | gcvT |
|---|
| ID | 5670184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 2142064 |
|---|
| End bp | 2143161 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641240703 |
|---|
| Product | glycine cleavage system aminomethyltransferase T |
|---|
| Protein accession | YP_001506126 |
|---|
| Protein GI | 158313618 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase) |
|---|
| TIGRFAM ID | [TIGR00528] glycine cleavage system T protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.419234 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.186762 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAGAGC TGCGTCGGTC CCCGCTACAC GAACGGCACG TCGAGCTGGG CGCCAAGACG
GCCGCCTTCG GCGGGTGGGA GATGCCGATC GAGTACGCCG GCCGGGGCGT GCTCGCCGAG
CACGCGGCCG TCCGCGGCGC GGTGGGGATC TTCGACGTCA GCCACCTGGG CAAGGCCCGG
GTCGCCGGCC CCGGCGCGGC CGAGTTCGTC AACACCTGCC TGACCAACGA CCTGAGGCGG
GTCGGCCCCG GCCAGGCGCA GTACACGCTG TGCTGCGACG AGACCGGCGG CGTCGTCGAC
GACCTGATCG CTTACTACTA CGCCGTCGAC AACGTGTTCC TCGTGCCCAA CGCGGCCAAC
ACCGCCGAGG TCGTCCGGCG GCTCGCCGCG CAGGCGCCCG CCGGCGTCGC CGTCACCGAC
CTGCACACCG AGTTCGCGGT GCTCGCAGTG CAGGGCCCTG CCGCGCCGGA GGTGCTGCGC
AAGCTCGGCC TGCCCGCCGA CGGTGCCTAC ATGAGCTTCG CCGACGCCGA GTGGAAGGGG
CGGCCCGTCA TCGTCTGCCG CTCCGGCTAC ACCGGCGAGG CGGGCTTCGA GCTCCTGCCG
CGCTGGGCGG ACGCGGTGCC GCTCTGGGAC GAGCTGCTGA CGGTGGTGAC CGGCCTCGGT
GGCCTGCCGT GCGGCCTCGG CGCCCGGGAC ACCCTGCGCA CCGAGATGGG CTACCCGCTG
CACGGCCAGG ATCTCTCCCT GTCCATCAGC CCGGTGCAGG CCCGGTCGGG GTGGGCCGTC
GGCTGGGACA AGCCGGCGTT CTGGGGCCGC GAGGCGCTGC TCGCCGAGCG CGCGGCGGGC
CCGGCGCGGT CGCTGTGGGG GCTGCGCTCG AACGACCGCG GCATCCCGCG CCCGCACATG
CGGGTGAGTG GCCCGGATGG TGCCGAGCTC GGCGAGGTCA CCAGCGGCAC GTTCTCCCCG
ACCCTGCGGC AGGGCATCGG CCTTGCCCTG CTCGACCGCT CAGTGACCGC CGGCGACGAG
GTGGCGGTGG ACGTGCGCGG CCGCGTCTCG ACGATGACGG TCGTCCGCCC GCCGTTCGTC
TCCGCCTCGC CCAGGTGA
|
|---|
| Protein sequence | MGELRRSPLH ERHVELGAKT AAFGGWEMPI EYAGRGVLAE HAAVRGAVGI FDVSHLGKAR
VAGPGAAEFV NTCLTNDLRR VGPGQAQYTL CCDETGGVVD DLIAYYYAVD NVFLVPNAAN
TAEVVRRLAA QAPAGVAVTD LHTEFAVLAV QGPAAPEVLR KLGLPADGAY MSFADAEWKG
RPVIVCRSGY TGEAGFELLP RWADAVPLWD ELLTVVTGLG GLPCGLGARD TLRTEMGYPL
HGQDLSLSIS PVQARSGWAV GWDKPAFWGR EALLAERAAG PARSLWGLRS NDRGIPRPHM
RVSGPDGAEL GEVTSGTFSP TLRQGIGLAL LDRSVTAGDE VAVDVRGRVS TMTVVRPPFV
SASPR
|
|---|
| |