| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1749 |
|---|
| Symbol | |
|---|
| ID | 5670151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 2098217 |
|---|
| End bp | 2099317 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 641240670 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001506093 |
|---|
| Protein GI | 158313585 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0647] Predicted sugar phosphatases of the HAD superfamily |
|---|
| TIGRFAM ID | [TIGR01457] HAD-superfamily subfamily IIA hydrolase, TIGR01457
[TIGR01460] Haloacid Dehalogenase Superfamily Class (subfamily) IIA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0343675 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000628636 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGACGGTCC CCCGAGAGGC GGCGGGCACG GCGTGGTCCG TGCTCGCCGG AACGAGCCGG
CCACTGGTGG CGATGTTCGA CGTCGCGTTG ATGGATCTCG ACGGGGTGGT GAACCGCGGC
GAGCGGGCTG TGCCGCACGC CGCCGCGGCC ATCGAGGCCG CGGGCCGGCA GGGGATGCGC
ACCGTCTACG TGACGAACAA CGCGCTGCGG ACCCCGGAGA CCGTCGCCGC GCGGCTGACG
GGTTTCGGCG TGCCAGCCGA ACCGCCGGAG GTCGTCACCT CGGCGCAGGC GGCGGCGCAC
GTGCTCGCCG AACGGCTACC GGCCGGGGCG GTGGTCCTGG TCGCCGGAGG TGTCGGGCTC
CGGGAGGCGG TGCGCGCGGA GGGCCTGGTC CCGACCGGGT CGGCCGCGGA CGAGCCGGCC
GCCGTGGTCC AGGGCTTCGA TCCGGAGATC AACTATGCCC GGCTGGCCGA GGCGGTGCTG
GCGATCCGGG CGGGGGCGTG GTGGGTCGCG AGCAACACCG ACCTGACGGT GCCGACGGAG
CGTGGCCTGG CGCCCGGTAA CGGGGCGCTG GTGGCCTTCG TTCGGGCCGC GACGGGCGCG
GAGCCCGAGG TGACCGGGAA ACCGGAGTTC GCGATGCACG CGGAGTCGGT GCGGCGCAGC
GGCGCGCGTG ATCCGATCAT CGTCGGCGAC CGGCTGGACA CCGACATCGA GGCGGGTTTC
CGTGCCGGCA CGCCGACTCT GCTGGTGTTC ACCGGTGTCA CCGGGCCCGC GGAGCTGCTC
GGCGCGCCCG CGCGGCACCG GCCGACCTTC CTCGCCGCCG ACCTGCGCGG GCTGCTGCGC
CCCCAGCCCG CCGCGCTCGC CCGGGACGGC TCATCCCGGT GCGGCGGGTG GACGTGCGAC
CTGGACGGCG GCACCCTGCG CTGGCACCAG GCCGACCCCG GGAGCGCCGG GCTGGACGAC
GGGCCGGACG ACGGGCTGGA CGCGCTGCGG GCCGCGTGCG CGCTGGTCTG GGCGGCAGCG
GACGAGGGCC GTCCGGTCGA GGCCCTGGCC ACTGATCGGC CGCCGGGCTG CGAGGACCTG
CGCGCGCCGG CCGCGCGCTG A
|
|---|
| Protein sequence | MTVPREAAGT AWSVLAGTSR PLVAMFDVAL MDLDGVVNRG ERAVPHAAAA IEAAGRQGMR
TVYVTNNALR TPETVAARLT GFGVPAEPPE VVTSAQAAAH VLAERLPAGA VVLVAGGVGL
REAVRAEGLV PTGSAADEPA AVVQGFDPEI NYARLAEAVL AIRAGAWWVA SNTDLTVPTE
RGLAPGNGAL VAFVRAATGA EPEVTGKPEF AMHAESVRRS GARDPIIVGD RLDTDIEAGF
RAGTPTLLVF TGVTGPAELL GAPARHRPTF LAADLRGLLR PQPAALARDG SSRCGGWTCD
LDGGTLRWHQ ADPGSAGLDD GPDDGLDALR AACALVWAAA DEGRPVEALA TDRPPGCEDL
RAPAAR
|
|---|
| |