| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1730 |
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| Symbol | rplT |
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| ID | 5670132 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 2067084 |
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| End bp | 2067464 |
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| Gene Length | 381 bp |
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| Protein Length | 126 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641240648 |
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| Product | 50S ribosomal protein L20 |
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| Protein accession | YP_001506074 |
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| Protein GI | 158313566 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0292] Ribosomal protein L20 |
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| TIGRFAM ID | [TIGR01032] ribosomal protein L20 |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00695308 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00143351 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCACGCG TGAAGCGGGC GGTCAACGCC CAGAAGAAGC GCCGCGAGGT TCTCGAGGCC
GCCAGCGGTT ACCGGGGCCA GCGCTCGCGG CTCTACCGCA AGGCCAAGGA GCAGATGCTC
CACTCGATGA CCTACTCCTA CCGGGACCGT CGCGCGCGCA AGGGCGACTT CCGGCAGCTG
TGGATCACTC GTATCAACGC CGCGGCGCGG GCGAACGGTC TGACCTACAA CCGCTTCGTC
CAGGGCCTGC GGCTGGCCGG TGTCGAGGTG GACCGCAAGA TCCTCGCCGA TCTCGCCGTC
AACGACGCGG CCGCGTTCGC CGCCCTCGTC GAGGTCGCCC GTGCGGCGCT GCCCGCGGCG
GCCGAGACCT CGGCCGCCTG A
|
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| Protein sequence | MARVKRAVNA QKKRREVLEA ASGYRGQRSR LYRKAKEQML HSMTYSYRDR RARKGDFRQL
WITRINAAAR ANGLTYNRFV QGLRLAGVEV DRKILADLAV NDAAAFAALV EVARAALPAA
AETSAA
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