| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1723 |
|---|
| Symbol | |
|---|
| ID | 5670125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 2059626 |
|---|
| End bp | 2060309 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641240641 |
|---|
| Product | riboflavin synthase subunit alpha |
|---|
| Protein accession | YP_001506067 |
|---|
| Protein GI | 158313559 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0307] Riboflavin synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00187] riboflavin synthase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.516188 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00196087 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTCACCG GCATCGTCGA AGAACTCGGC GTGGTGACCG CCATCGAGCC GCGGCATGAC
GCCGCGTCGC TGACCGTCGA GTGTCATGGC GTACTCGATG ACGTGACGCA CGGCGCTTCC
GTCGCCGTGA ACGGGGTCTG TCTCACGGTG ACCTCGTTCG TCCACCCCCC GGACGGCGCC
GCCGGCGGGG ACGTATCTGG GCCGGCCGGT TCCTCCGGGA CGGCGGCCGG CGGCTTCACG
GCGGACGTGA TGCTCGAGAC GCTGCGCAGG TCCGCCCTCG GTGACCTCTC GGTCGGGGAC
CGGGTGAACC TTGAGCGCCC CGTCCGCCTC TCCGACCGGC TCGGCGGGCA TCTGGTGCAG
GGGCACGTCG ACGGTGTCGG CGTCGTCCTC GAGCGGGTGC CGGCCGAGCA CTGGGAGGTC
GTCCGCGTCA GCCTGCCGCC GGGGCTGGAC CGCTACCTCG TCGAGAAGGG CTCGGTGACC
GTGGACGGGG TCAGCCTGAC CGTCGTCGAC GTCCGCGCCG CGGCCGGCGG TGAACCGGCC
AGTTTCTCCG TCAGCCTCAT CCCGACCACC CTCGCCGTGA CGACGCTGGG CACCCGCGCC
GTCGGTGACA AGGTCAACAT CGAGGTGGAC GTCGTGGCCA AGTATGTCGA GAAGCTCCAC
GCCGACCTGA ACGGATCACA CTGA
|
|---|
| Protein sequence | MFTGIVEELG VVTAIEPRHD AASLTVECHG VLDDVTHGAS VAVNGVCLTV TSFVHPPDGA
AGGDVSGPAG SSGTAAGGFT ADVMLETLRR SALGDLSVGD RVNLERPVRL SDRLGGHLVQ
GHVDGVGVVL ERVPAEHWEV VRVSLPPGLD RYLVEKGSVT VDGVSLTVVD VRAAAGGEPA
SFSVSLIPTT LAVTTLGTRA VGDKVNIEVD VVAKYVEKLH ADLNGSH
|
|---|
| |