| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1720 |
|---|
| Symbol | |
|---|
| ID | 5670122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 2056468 |
|---|
| End bp | 2057955 |
|---|
| Gene Length | 1488 bp |
|---|
| Protein Length | 495 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 79% |
|---|
| IMG OID | 641240638 |
|---|
| Product | Fmu (Sun) domain-containing protein |
|---|
| Protein accession | YP_001506064 |
|---|
| Protein GI | 158313556 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.847292 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00284187 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGTCT CCGCGCCCCG CCGGGGCGGC ACGACAGACC CGGCGCGCCT GCTCGCCTGG
GAGGTGCTGC GCGCTGTCGA CGAGCGCGGC GCCTACGCCA ACCTGCTGCT GCCCGCGCTG
CTGTCCGGGC GCCGGCTCTC CCCGCGCGAC CGCGGCTTCG CCACCGAGCT GACCTACGGA
TCGCTGCGGG CCCAGGGCAC CCTGGACGGG GTCCTCGACA CGGTGACCAG CCGGCCCGTC
GCCAGCGTCG ACCCGCCGGT GCGCGACGCG CTGCGGCTGG GCGCCTACCA GCTCCTGTCG
ACCCGGGTGC CGCCCCGCGC GGCGGTCGCG TCCACGGTCG ACCTGGTCCG CGCCACCTGC
GGGGAACGCC CGGTGCGGTT CGCGAACGCG GTGCTGCGCC GGGTCGCCGC GCGGATCGAG
GCGGCGGCCG GTGACATCGC GGTCCTGCTC TCGGCCCCGG ACATCGCCGA GGACCCGGCC
GGCCACCTCG CGGTGGTCAC CGCCCACCCG CGCTGGATCG TCGACGTCGT GCTCGACGCC
CTGGGCGGGG ACGTCGCCGG CGCGCACGCC GCGCTGGCCG CCAACGACAC CCGCCCGGCG
GTGCACCTGG TCGCCAGGCC CGGCCGGATC GACGCCGAGG CGCTGGTGGC GCAGGCCGCC
TCGGTCGGCC TGGGGGCACG GCGCGGCGCC GGCTCGCCCT ACGCCGTCCA CCTGGACGGG
GGAGACCCGG GGTCGCTGCC GGCCGTCGCG GCCGGCGACG CGTCGGTGCA GGACGAGGGC
AGCCAGCTGG TCACCCTGGC CCTTGCCTCG GTCCCCACCA TCGGCCGGGA CACCGGGCTG
ACCGTGGACC TGTGCGCCGG GCCGGGTGGC AAGGCCGCCC TGCTGGCCGC GCTGCAGGCG
GTCGGTGAGC CGGCGGAAAC TATGCGCGAG CCGGCGGCAG GGGGGCACCG CCCGCCGCCG
GCGCGGCTGC TCGCGCTCGA ACCGCGCGCG GCTCGCGCCG GCCTGGTCGC CGCCTCGCTC
GCCGGGTTCC CGGCCGCTCT GGCGGTGCGC GCCGACGGGC GGTTCCCGCC GGTGCGCCCC
GGCATGGCGG ACCGGGTGCT GGTGGACGTC CCGTGCTCCG GCCTCGGCGC GCTTCGGCGC
CGGCCCGAGG CCCGGTGGCG GCGCACGCCC GCGGACGTCG CCGCGCTGGT GCCGCTGCAG
CGCCAGCTCC TCGTCGCCGC GCTGGATCTG GTGCGTCCGG GCGGGGCGGT GGCCTATGTC
ACCTGCTCGC CGCACCCGGA GGAGACGTCC GAGGTGGTCA CCGCGATCGC CCAGCAGCGG
GGGGACGTCG CCATCCTCGA CGCGCGGCGC TGCCCGCCGT TCGCCGGCCC GCTGTTCGGT
GACGGTGCGC CGGGCGGCCT CGGGGACGGT CCGTTCGTCC AACTCTGGCC GCACCTGCAC
GGCACCGACG CGATGTTCCT GGCGCTGCTG CGCCGGGCGG ACCGCTGA
|
|---|
| Protein sequence | MSVSAPRRGG TTDPARLLAW EVLRAVDERG AYANLLLPAL LSGRRLSPRD RGFATELTYG
SLRAQGTLDG VLDTVTSRPV ASVDPPVRDA LRLGAYQLLS TRVPPRAAVA STVDLVRATC
GERPVRFANA VLRRVAARIE AAAGDIAVLL SAPDIAEDPA GHLAVVTAHP RWIVDVVLDA
LGGDVAGAHA ALAANDTRPA VHLVARPGRI DAEALVAQAA SVGLGARRGA GSPYAVHLDG
GDPGSLPAVA AGDASVQDEG SQLVTLALAS VPTIGRDTGL TVDLCAGPGG KAALLAALQA
VGEPAETMRE PAAGGHRPPP ARLLALEPRA ARAGLVAASL AGFPAALAVR ADGRFPPVRP
GMADRVLVDV PCSGLGALRR RPEARWRRTP ADVAALVPLQ RQLLVAALDL VRPGGAVAYV
TCSPHPEETS EVVTAIAQQR GDVAILDARR CPPFAGPLFG DGAPGGLGDG PFVQLWPHLH
GTDAMFLALL RRADR
|
|---|
| |