Gene Franean1_1671 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_1671 
Symbol 
ID5670073 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp1997602 
End bp1999305 
Gene Length1704 bp 
Protein Length567 aa 
Translation table11 
GC content67% 
IMG OID641240589 
ProductHNH endonuclease 
Protein accessionYP_001506015 
Protein GI158313507 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.953855 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTCCC TTCCCGGCTC GAGGCGTGGC GCATCGCCAC GCGGGCAACG CACCGCCGCC 
AACGCGCCCG ACGCCAAGGT CGGATCCGCC GCCACATCCA CCGGATCAGA CGGCCGACCC
ACACCAGGGG ATGAGGCCGC CACCGTGGTC GGGAGTCCCC CGACGCACTC GACCAGTTCA
GGAGAGGACT CGTGGGCAAC CAGCGGCGAC ACCCGCACCC GCGAGGCGCT CGACACGAAA
GCTGACGATC TCTTCAGGGA GATCTCTCGC GTCGTCCGCA CGATCGCGGC CGGCCACGCG
GATCTACTGA CCCTGCTGGC TCAGTTCGCG GCCCTCCGGC TCCCGCCAAG CGCCGAGCAA
TCACTCGTCT CCGACGAGTT CGCACCCGAA GAGATAGCCA CCGCGATGGC GGTCTCGCCC
CAGGCGGCCT CCGCCCAGCT GACGTTCGCC TGCACCGTCA CCCGGCGCCT TCCGAACGCA
GTCGACGCGC TCAGGGCGGG AGTCCTGGAT CTCCAACGAC TGCAGTCACT GGAGAAAGCG
GTCCACCCGC TCGACGACCG CACCGCAGCC AGAGTCGAAG CACACGTGCT CGCCGGAGGA
GCACGACCGA ACCGGCGCGC CTTCACCGAT GCCTGCAGGC GCGCCGTAGC CAGGATCGAC
CCCGAAGGCG CGGCAGACCG CGCGGAGACC CGGCGCAAGG ACCGACGGGT GTGGGTCTCT
CCCGACGAGG ACGGGACAAG CGCGCTCACA GCCGTCCTTC CCACGGAGGA CGCCGAGGCC
TGCTACCAGC GGATCGATCA GACTGCTCGT TCCATCAGTG CCAACAGATC CGACGGTGAC
GACCGGACCC GCGCCCAGAT TCGTGCCGAC GTGCTGGTCG ATCTACTCAC GGGCCGAGGC
AGCCACGCCA CGCCGATGCC GTGCGACATT CAAGTCGTCG TACCCGCGAC GACCCTGATG
GGCCCGTCCA ACGACCCCGG CGAGATTCCG GGGTACGGAC CGATCCCCGC ACGAATAGCC
CGGGAGATGG CCAAACGGCC TGGCTCAACC TGGCGGCGGA TTCTGACCGA TCAACAAGGA
CATCTGATCG AGGTCGCCGA CCGGCGTCTA CCAAGCGCCG CACAGGTCCG CCATGTTCGT
GCCCGCAACC GGACCTGTGT ATTCACAGGC TGCACCCGGC CATCACGGCG CACGGATACC
GATCACACCA TCTCCTTCTC CGAGGATGGA CGGACTCTGA CCAAGAATCT CGGTCCGCTG
TGCCGTCGAC ACCACCGGAT GAAACATCGT GGCCACTGGC AGGTCACACA ACCCCAGGAA
GGAACCTTCG TGTGGACCAG CCCACTCGGG CGAACCAGTG TCACCACCCC TGACACATAT
CTCGAAGTCG ATGTCTCACC CGGGACTACG ACCAAGAATC GGCACGCCGA GCACTTGAGG
GAAGATCACG GGTACACGCG ATCCCGCCCG AAAACGCCGA CCGGGGCGGG AAAGGATCCT
GACTGGCAGA TGCCATCCCA GACAAGGCCT GACGTGGCCC GGCGTGAGTC ATCTGCTTGG
CGTCAGGCAG GATCGGGGCG GGACCTGCGC CGGAGGGAAC CGGGCGGCAG AGAAATCGAG
GGAGTCAACC AACGTGAGGA ACACAACCGC GCCGCCGGAG CTCGCGAGCC GAGTCGGATC
CGTCCAGACC TCTCCGGTAC GTGA
 
Protein sequence
MTSLPGSRRG ASPRGQRTAA NAPDAKVGSA ATSTGSDGRP TPGDEAATVV GSPPTHSTSS 
GEDSWATSGD TRTREALDTK ADDLFREISR VVRTIAAGHA DLLTLLAQFA ALRLPPSAEQ
SLVSDEFAPE EIATAMAVSP QAASAQLTFA CTVTRRLPNA VDALRAGVLD LQRLQSLEKA
VHPLDDRTAA RVEAHVLAGG ARPNRRAFTD ACRRAVARID PEGAADRAET RRKDRRVWVS
PDEDGTSALT AVLPTEDAEA CYQRIDQTAR SISANRSDGD DRTRAQIRAD VLVDLLTGRG
SHATPMPCDI QVVVPATTLM GPSNDPGEIP GYGPIPARIA REMAKRPGST WRRILTDQQG
HLIEVADRRL PSAAQVRHVR ARNRTCVFTG CTRPSRRTDT DHTISFSEDG RTLTKNLGPL
CRRHHRMKHR GHWQVTQPQE GTFVWTSPLG RTSVTTPDTY LEVDVSPGTT TKNRHAEHLR
EDHGYTRSRP KTPTGAGKDP DWQMPSQTRP DVARRESSAW RQAGSGRDLR RREPGGREIE
GVNQREEHNR AAGAREPSRI RPDLSGT