| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1645 |
|---|
| Symbol | |
|---|
| ID | 5670047 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 1964442 |
|---|
| End bp | 1966430 |
|---|
| Gene Length | 1989 bp |
|---|
| Protein Length | 662 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 78% |
|---|
| IMG OID | 641240563 |
|---|
| Product | membrane-bound lytic murein transglycosylase B-like protein |
|---|
| Protein accession | YP_001505989 |
|---|
| Protein GI | 158313481 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0719412 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACCGG CGGACGGCGA CACGCCGAGC GGCCGCCACC GGCGGCCCCG GCGGCAGCCC
CGTGACGGTC GCGTCCGGAC GGCGTTGCCA GTGGTCGCCA CGGCGGGGCT GCTGCTGCTC
TGCTCCGGCG CGGCGGCCCA GCCGGAGTCG GAGCCGTTGC CATCCGATCA GGCCGGCCGG
TGGAACCTGG CGGATTCCAG GCCGCCGGGC ACGGCGCCGA CCGACGTGGC GAGCCTCACC
GAGATCCCCG CGGGCCTCGA CCCGCTCGGA GAGGACTCTG GTGCGGCCGG CGATGGCGGT
ACCGACGCGA CGACCGCCCC GGGGGACGAG ACCGGCGGGG ACGGGAGCGC CGGCAGCGGG
AGCGGGAGCG ACGACGGCTC GGTGCCGGCG GGCACTGTCA TCACGGGTGG GCGGGGCGTC
CCCGACCGCG TCCTCGACGC CTACCGCCAG GCCGCCGGGC GCGTCGAACG GGAGCTGCCC
GGCTGCCACC TCCCGTGGGA ACTCCTCGCC GCCATCGGGA AGATCGAGTC CGGCCACGCG
GCGGGCCGGC CGATGGCCGA CGACGGCACG GTGACCCGGC CGATCCTCGG TCCCGTCCTC
GACGGCCGGG ATGGGCGCGC ACTGATCCGC GACTCGGACG ACGGCGTGTT CGACGGCGAC
GCCACGCTGG ACCGCGCGGT CGGCCCGATG CAGTTCATCC CGACCACCTG GCGGACGTCG
GGCCGGGACG GGTCGGGCGA CGGCCGCCGC GATCCGCAGA ACATCCACGA CGCGACGCTC
GCCGCGGGCG GCTACCTCTG CGCCCACGGG CGGGACGTGA GCCGGCCGGA CCAGCTGCGC
GCGGCGATCT TCTCCTACAA CCCGTCGGCG TCCTATGTGA ACGCCGTGCT GACCTGGATG
ACCGCCTATC GGGAGAAGGG CGCGACCGCG CTGCCCGGCG AGCCGGCGCA GGCCGGTGAC
CCGGAGCCGG CTATCCCGGA GCTGACCGCC CCGGAGCCGG CTGGCGACCC CCTGGTCCCG
GCCGAGCCCA CGACGCCAGC TGAGCCCACC ACGCCGGCTG AGCCCACCGC GCCGGCCGAA
CCGGGCACGC CGGCCCCCGG TGAGCCGCCG GCCGGGCCGG GGCCGTCGCT GCCTGCCGGC
GGGGACGGGG GGCCCCGCGT CGAGGTCGTC CCGGAGGAGC ACCGGCCGGG TGACGGGGGC
GAGGTCGGCG AGGAGCCGGT GTCCGCGGCG CTGCGCGACC TTGGCATCGC GGTCACCGAT
CTCGCCGTCA CACCGGTCGA GCTCGACGGC GCCGCCGCCG GCTTCGAGGC GCTGGACCTG
ACCTCGGCGC GCCGCCCGGC TCCGGCCGGA CCGCTGCGGG TGGTGGCCAC CGCCGCGACG
GAGGCCGGGC GCCCGATCGC GAGAAGCGAG ATCACGATTC CCGCCGAGCC GGACCGGCCC
GCGCAGGCAG CGCCCGGGGG CACGGGAGCG GCGTCCGGGG CCGCTGGAAC GACGCCCGGG
GAGGAGAAGC CGACCCTGCT CGCGCGGCTC GCCGGCGGGG ACCTCGCCGC GGCGGGCCTG
CCCGCGGGAC GGTTCGTCCT CACCCTCGAG GCGCATGCCG AGTCCGGGCG CGTGTACACG
GTGCGGCTGC TGGTCAGCCA GGTGAACGTG AAAGCCTTCG TCGCCCGCCC GGCGGCCACC
GGCACTCCGC CCACCGGGCA CGCGCCGTCC CCGAAGCCGC CGGCGTCCGC ACCCGGGCCG
TCTACCGGAT CGCCCGCCGG CGCACCGAGA ACTCCCGTCC GGCCCGCCAC TCCACCGGCC
GCCTCGCCGC CAGCCACGTC GACACCGGCC ACCTCAAAGC CAGCCACGTC TCCACCGGCC
GCCTCGCAGC CGGCCGCCTC GCAGCCGGCC ACCACGCAGC CGGCCACCAC GGCGCCAGCC
GCGGTGGGGT CCGGCCCCGC GACGCCCACG GCGACTCGGA CGGGTGGCCC GGCGTCCGCG
GCGCCGTAG
|
|---|
| Protein sequence | MTPADGDTPS GRHRRPRRQP RDGRVRTALP VVATAGLLLL CSGAAAQPES EPLPSDQAGR
WNLADSRPPG TAPTDVASLT EIPAGLDPLG EDSGAAGDGG TDATTAPGDE TGGDGSAGSG
SGSDDGSVPA GTVITGGRGV PDRVLDAYRQ AAGRVERELP GCHLPWELLA AIGKIESGHA
AGRPMADDGT VTRPILGPVL DGRDGRALIR DSDDGVFDGD ATLDRAVGPM QFIPTTWRTS
GRDGSGDGRR DPQNIHDATL AAGGYLCAHG RDVSRPDQLR AAIFSYNPSA SYVNAVLTWM
TAYREKGATA LPGEPAQAGD PEPAIPELTA PEPAGDPLVP AEPTTPAEPT TPAEPTAPAE
PGTPAPGEPP AGPGPSLPAG GDGGPRVEVV PEEHRPGDGG EVGEEPVSAA LRDLGIAVTD
LAVTPVELDG AAAGFEALDL TSARRPAPAG PLRVVATAAT EAGRPIARSE ITIPAEPDRP
AQAAPGGTGA ASGAAGTTPG EEKPTLLARL AGGDLAAAGL PAGRFVLTLE AHAESGRVYT
VRLLVSQVNV KAFVARPAAT GTPPTGHAPS PKPPASAPGP STGSPAGAPR TPVRPATPPA
ASPPATSTPA TSKPATSPPA ASQPAASQPA TTQPATTAPA AVGSGPATPT ATRTGGPASA
AP
|
|---|
| |