| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1643 |
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| Symbol | metH |
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| ID | 5670045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 1959445 |
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| End bp | 1963233 |
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| Gene Length | 3789 bp |
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| Protein Length | 1262 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641240561 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_001505987 |
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| Protein GI | 158313479 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0494405 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGGAT CCGGATCGCT CGACGAGGTG TCGGTCCCCG CCGGCACTGT CGGAGGCGAG
CAAGCCGAGG CCGGCGCCGG CGCACGGCCC GAACCCGGCG GTGCCGTCCG GCCGGCGGCC
GCCGGCAGCG AACAGGCGCT GCGGGAGCTG CTGGAGCAGC GGGTCGTCGT CCTCGACGGG
GCCTGGGGCA CGATGCTGCA GAACGCCGGC CTCACCCCCG CCGACTACCG CACGGAGCGG
TTCGCCGACC ACCCGAAGGA CGTCACCGGC GACCCGGACC TGCTGAACCT GACCCGGCCG
GACGTCATTC TCGACGTGCA CCGGCAGTAC CTGGCGGCCG GCGCGGACAT CACGACCACG
AACACGTTTA CCGCGACGAG CATCGCCCAG GCCGACTATG GCCTGCAGTC GCTCGTGCGG
GAGATGAACG TGCGGGGCGC GCAGCTGGCC CGCCAGGCCG CCGACGAGGC GGGCGGGCGG
CGGTTCGTCG CCGGGTCGAT CGGGCCGCTG AACGTCGCGC TCTCGCTGTC GCCGCGGGTC
GAGGACCCGG CCTACCGGGC GGCAACCTTC GACGAGGTCC GGGACTCCTA CGCCGAGCAG
ATCGAGGCTC TCGCCGAGGG CGGGGTCGAC CTGCTCCTCA TCGAGACGAT CTTCGACACG
CTCAACGCGA AGGCCGCGAT CGCCGCCGCC CGCGAGGTCG CGCCCCAGCT GCCGCTGTGG
ATCTCGGTGA CGATCGTCGA CCTGAGCGGG CGGACGCTGT CGGGGCAGAC CGTCGAGGCG
TTCTGGAGCT CCATCGCGCA CGCGAACCCG CTGGTCGTCG GGGTGAACTG CTCGCTGGGC
GCCGACGAGA TGCGCCCGCA CGTCGCCGAC CTCGCCCGCC TCGCGGGGAC GTACACGGCC
TGCCATCCCA ACGCCGGCCT GCCGAACGCG TTCGGCGGCT ACGACCAGTC CCCGGAGGAG
GCCGGCCGGC TGATCGGCGA GTTCGCCGAG GCGGGCATGG TCAACATCGT CGGCGGCTGC
TGCGGGACGA CCCCGGCGCA CATCGCGCGG ATCGCCGCCG CGGTCGCCGG CGCGGCACCG
CGCCCGGTTC CGGCGCTGCC GCCGCGCACC CGGTTCAGCG GGCTGGAGCC GTTCGAGATC
GGCCCGGACA CCGGGTTCGT CATGATCGGC GAGCGCACCA ACGTCACCGG TTCGGCGCGG
TTCCGCCGGC TGATCGAGGG CAACGACTTC CAGGGCGCCA TCGACGTCGC CCTGGAGCAG
GTGCGCGGCG GCGCGAACCT GCTCGACGTC AACATGGACG CCGACCTGCT CGACAGCGAG
CGGGCGATGA CGACCTTCCT GAACCTGCTG GCCACCGAGC CGGAGGCGGC CCGGCTGCCC
ATCATGATCG ACAGCTCCCG CTGGACCGTG CTGGAGGCGG GCCTGCGCTG CGTGCAGGGC
AAGGGCGTGG TCAACTCGAT CAGCCTCAAG GAGGGTGAGG AGCCCTTCCT CGAGCAGGCC
CGGCGCATCC GCGACTTCGG CGCCGGCGTC GTCGTGATGG CCTTCGACGA GCAGGGCCAG
GCCGAGACCG CCGAGCGCAA GGTGGCCATC TGCGGCCGCG CCTACGACCT GCTCACCCAG
CGGGTCGGCT TCCCGGCCGA GGACATCGTC TTCGACCCGA ACGTGCTCGC CGTCGCCACC
GGAATCGCCG AGCACAACGG CTACGCGAAG GCCTTCCTCG ACGCGCTGCC GCTCATCAAG
CAGCGCTGCC CCGGGGTGCA CATCAGCGGT GGCATCTCGA ACCTGTCGTT CTCCTTCCGC
GGCAACGACG TCGTCCGCGA GGCGATGCAC TCGGCGTTCC TCTTCTACGC CGTGCAGGCC
GGGCTCGACA TGGGCATCGT GAACGCCGGC CAGCTCGCGG TCTACCAGGA CATCCCCGCG
GACCTGCTCG AGCTCGTCGA GGACGTGCTC TTCGACCGGC GGGACGACGC CACCGACCGG
CTCGTCTCGT TCGCCGAGAC GGTGACCGGC AGCGGCACGA AGCGCGTCGT GGACCTGTCG
TGGCGCGAGG GGCCGGTGGA GCAGCGGCTG TCCCACGCGC TCGTGCACGG CATCGTCGAC
TTCATCGAGG CCGACACTGA GGAGGCCCGG GCCAGCGCGG CCCGCGCGCT CGACGTGATC
GAGGGCCCGC TGATGGACGG CATGAAGATC GTCGGTGACC TGTTCGGCTC CGGGAAGATG
TTCCTGCCGC AGGTCGTGAA GAGCGCCCGG GTGATGAAGC GCTCCGTCGC CTACCTGGAA
CCGTTCATGG AGGCCGAGAA GCAGCAGGCG CTGCTGGACG GCACCGCCAG CTCCGACCGC
AGCGGCAACG GCAAGGTGGT CCTCGCGACG GTCAAGGGCG ACGTCCACGA CATCGGCAAG
AACATCGTCG GTGTGGTCCT CGGCTGCAAC AACTACGAGG TGATCGACCT GGGGGTGATG
GTCCCCGCGA AGGTCATCCT CGACACGGCG GTGGCCGAGA GCGCCGACGC GATCGGCCTG
TCCGGCCTGA TCACCCCGTC GCTGGACGAG ATGGTCTCGG TGGCCACCGA GATGCAGCGC
CGCGGGCTGA AGCTGCCGCT GCTGATCGGC GGCGCGACCA CCTCACGCCA GCACACCGCC
GTGCGCATCG CCCCCGCCTA CGACGCCACA ACCGTCCACG TGCTGGACGC CTCCCGTGTC
GTCGGCGTGG TCTCCGACCT GCTGGACAGC GACCGGGCCG CCGACCTCGC CGTGCGCAAC
CGGGACGAGC AGCAGCACCT GCGTGAGCAG CACGAGAAGC GCCAGCAGCA GCCGCTGCTC
ACCCTCGCCC AGGCGCGGGC GAACCGCGAG CGGGTCTCGT TCGACGAGCT GCCCACACCG
GCGTTCACCG GCATCCGGGT CGTCACGCCG GAGCTCAGCG CGCTGCGCGA GATGATCGAC
TGGCAGTTCT TCTTCCTCGC CTGGGAGCTG AAGGGCAAGT ACCCGGCGAT CCTCGACCAG
CCGGTCGCCC GCGAGCTGTT CGACGAGGGC AACGCGCTCC TCGACCAGAT CATCGCGGAC
GGCTCCCTGC GCGCCGAGGG CGTCTACGGC TTCTGGCCGG CCAACTCGGA CGGCGACGAC
ATCCTGATCG ACGTCGGCGC CGGCGATGGT GGCGGTGACG CCGGTGCCGG CCTCGGTGCC
GACGCGGCGG GCCGGCTGCG GGTACCGATG CTGCGCCAGC AGACCGCCAA GCCCACGGGA
CGCCCGAACC GCAGCCTCGC CGACTACGTG GCCCCGGCCG GCGACCATCT CGGCGGGTTC
GCGGTGGCCA TCCACGGCGC CGACACGCTC GCGGCCGCCT TCGAGGCCCG GCAGGACGAC
TACCGGTCGA TCATGGTCAA GGCGCTCGCC GACCGGCTGG CCGAGGCGTT CGCCGAGTAC
GTCCACCTCG AGGCGCGCCG CGCCTGGTTC GAGCCCGGGT CCGAGCCGGC GCTGGCGGAC
CTGCACGCCG AGCGGTTCCG CGGCATCCGC CCCGCCTTCG GCTACCCGGC GAGCCCGGAC
CACAGCGAGA AGCAGGCCCT GTTCGACCTG CTGGACGCCG GCCAGGTCGG CCTGGGCCTG
ACCGAGTCCT TCGCGATGAC CCCGGCCGCC GCCGTCAGCG GGCTGATCTT CGCCAGCCCG
GCGTCGCGGT ACTTCACCGT CGGGCGCATC GGCCGCGACC AGGTCGAGGA CTACGCCGCG
CGGCGCGGCC TGACGGTCGG CGACGTCGAG CGCTGGCTGC GCCCGAACCT CGCCTACGAC
CCCGAGTAG
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| Protein sequence | MAGSGSLDEV SVPAGTVGGE QAEAGAGARP EPGGAVRPAA AGSEQALREL LEQRVVVLDG
AWGTMLQNAG LTPADYRTER FADHPKDVTG DPDLLNLTRP DVILDVHRQY LAAGADITTT
NTFTATSIAQ ADYGLQSLVR EMNVRGAQLA RQAADEAGGR RFVAGSIGPL NVALSLSPRV
EDPAYRAATF DEVRDSYAEQ IEALAEGGVD LLLIETIFDT LNAKAAIAAA REVAPQLPLW
ISVTIVDLSG RTLSGQTVEA FWSSIAHANP LVVGVNCSLG ADEMRPHVAD LARLAGTYTA
CHPNAGLPNA FGGYDQSPEE AGRLIGEFAE AGMVNIVGGC CGTTPAHIAR IAAAVAGAAP
RPVPALPPRT RFSGLEPFEI GPDTGFVMIG ERTNVTGSAR FRRLIEGNDF QGAIDVALEQ
VRGGANLLDV NMDADLLDSE RAMTTFLNLL ATEPEAARLP IMIDSSRWTV LEAGLRCVQG
KGVVNSISLK EGEEPFLEQA RRIRDFGAGV VVMAFDEQGQ AETAERKVAI CGRAYDLLTQ
RVGFPAEDIV FDPNVLAVAT GIAEHNGYAK AFLDALPLIK QRCPGVHISG GISNLSFSFR
GNDVVREAMH SAFLFYAVQA GLDMGIVNAG QLAVYQDIPA DLLELVEDVL FDRRDDATDR
LVSFAETVTG SGTKRVVDLS WREGPVEQRL SHALVHGIVD FIEADTEEAR ASAARALDVI
EGPLMDGMKI VGDLFGSGKM FLPQVVKSAR VMKRSVAYLE PFMEAEKQQA LLDGTASSDR
SGNGKVVLAT VKGDVHDIGK NIVGVVLGCN NYEVIDLGVM VPAKVILDTA VAESADAIGL
SGLITPSLDE MVSVATEMQR RGLKLPLLIG GATTSRQHTA VRIAPAYDAT TVHVLDASRV
VGVVSDLLDS DRAADLAVRN RDEQQHLREQ HEKRQQQPLL TLAQARANRE RVSFDELPTP
AFTGIRVVTP ELSALREMID WQFFFLAWEL KGKYPAILDQ PVARELFDEG NALLDQIIAD
GSLRAEGVYG FWPANSDGDD ILIDVGAGDG GGDAGAGLGA DAAGRLRVPM LRQQTAKPTG
RPNRSLADYV APAGDHLGGF AVAIHGADTL AAAFEARQDD YRSIMVKALA DRLAEAFAEY
VHLEARRAWF EPGSEPALAD LHAERFRGIR PAFGYPASPD HSEKQALFDL LDAGQVGLGL
TESFAMTPAA AVSGLIFASP ASRYFTVGRI GRDQVEDYAA RRGLTVGDVE RWLRPNLAYD
PE
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