| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1493 |
|---|
| Symbol | |
|---|
| ID | 5669897 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 1794586 |
|---|
| End bp | 1794996 |
|---|
| Gene Length | 411 bp |
|---|
| Protein Length | 136 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641240413 |
|---|
| Product | nitrite reductase (NAD(P)H), small subunit |
|---|
| Protein accession | YP_001505839 |
|---|
| Protein GI | 158313331 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases |
|---|
| TIGRFAM ID | [TIGR02378] nitrite reductase [NAD(P)H], small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.571604 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.122318 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGGACCG TGGAAGCCGC GAAGGCCGCG AAGGCCGCGG AGGCCGTGGA GGCCGTGGAG
GCCGACGGGT GGGACAGCGT CTGCGGCTCC CGCGACCTCC CCGTCGAGCG GGGCGTCGCC
GCTCTGCTCG GTGACGTCCA GGTCGCGATC TTCCGGACCT ATGACGGCGC GCTCTTCGCT
GTCGGCAACC AGGATCCGTT CTCCGGAGCC TTCGTGCTCT CCCGGGGAAT CGTGGGCTCC
CGGGGAGAGA CTCCCACTGT CGCCTCCCCA CTTCACAAGC AGGTCTTCGA CCTGCGCACC
GGTCGCTGCC TCGACTCGGA CGGCGTCGTC ATCCCGACCT ACCCGGTGCG GGAACGTGAC
GGTTACGTGG AGGTCCACGT CGGGACGACA GCCGGGTGGG CGCCGCAGTG A
|
|---|
| Protein sequence | MRTVEAAKAA KAAEAVEAVE ADGWDSVCGS RDLPVERGVA ALLGDVQVAI FRTYDGALFA
VGNQDPFSGA FVLSRGIVGS RGETPTVASP LHKQVFDLRT GRCLDSDGVV IPTYPVRERD
GYVEVHVGTT AGWAPQ
|
|---|
| |