| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1457 |
|---|
| Symbol | |
|---|
| ID | 5669861 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 1753223 |
|---|
| End bp | 1754365 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641240377 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001505803 |
|---|
| Protein GI | 158313295 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4973] Site-specific recombinase XerC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.417277 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCAGGC CCTCACTGAA CCTCGGGACC TACGGCAACC TGTACACGGC GAAGTACGGC
GACGGCTACC GGGCACGCGC CCGGTACCGC GACTTCGACG GCCGCACGCG GCTCGTCGAA
CGCCACGCCA AGACCAAGGG CGCCGCCGAG CAAGCCCTAC GCACGGCCCT GCGGGACCGC
GCCCGTGTCG ACGTCGGCAC CGGCGCCATC ACCGCCGAAG CAAAGGTCGC CGTTCTTGCC
GAGGCCTGGT ACGAGTCCGT CCAGCGGCAG GACCGCTCCC CCAACACCAC CGCCGCCTAC
CGGACCCGAC TCGACAAGTC CGTGATCCCT GGCCTCGGCG AGCTACGTAT CCGAGAGCTG
ACGGTCGGCG TCGTCGACCG CTTCCTGTCC ATCATCGCCG AGAAGCATGG ACCGGCCGCC
GCCAAGCAGA CCCGCGCCGT CCTCTCCGGC ATGTGCGGTC TCGCGGCCCG CCACGACGCC
CTGGACCGCA ACGTCGTACG CGACGCCGGA CCGATCGCCG AGGCCACCTC CAAGGATCAG
CCGCGGGCCC TCACCCTCGA CCAGCTCCGA GAGCTGCGCG TCGCGCTCCG GAACGACCCG
AAGGCCGTCG GGCGCGACAT CCCGGAGTTC GTCGACCTAC TCATGAGCAC CGGCGTCCGC
ATCGGCGAAG CCGCCGGGCT GACGTGGGGT GCAGTGAACC TCGACGAGGG CTGGATCGAG
ATCCGCTCGA CCGTCGTACG GATCAAGGGC CAAGGTTTGT TCAACAAGCC GAAGCCCAAG
ACCAAGGCCG GCCACCGCCG CCTGCAACTC CCATCCTGGA TGATCCGGAC CCTGAAGCAA
CGCTTCGACA ACCAGCCGGA CGACGTGACG GTCTTCCCCG CTCAGCTCGG CGGACTACGC
GACCCGTCAA ACACTCAGGC CGACCTACGC GACGCATTCA AGGCCGTCGG CATGGAGTGG
GCAACCTCCC ACATCGTCGG CCGCAAGTCC GTCGCCTCAG CAATGGATAG CGCTGGCCTT
ACAGCACGCG CCGCCGCCGA CCAGCTCGGA CACCGCCAAG TGAGCCTCAC TCAAGACCGC
TACTTCGGCC GCAAAGTCGC CGAGACTGGG GCAGCCGCGA TACTTGAAGA ACTGGATGTT
TGA
|
|---|
| Protein sequence | MARPSLNLGT YGNLYTAKYG DGYRARARYR DFDGRTRLVE RHAKTKGAAE QALRTALRDR
ARVDVGTGAI TAEAKVAVLA EAWYESVQRQ DRSPNTTAAY RTRLDKSVIP GLGELRIREL
TVGVVDRFLS IIAEKHGPAA AKQTRAVLSG MCGLAARHDA LDRNVVRDAG PIAEATSKDQ
PRALTLDQLR ELRVALRNDP KAVGRDIPEF VDLLMSTGVR IGEAAGLTWG AVNLDEGWIE
IRSTVVRIKG QGLFNKPKPK TKAGHRRLQL PSWMIRTLKQ RFDNQPDDVT VFPAQLGGLR
DPSNTQADLR DAFKAVGMEW ATSHIVGRKS VASAMDSAGL TARAAADQLG HRQVSLTQDR
YFGRKVAETG AAAILEELDV
|
|---|
| |