Gene Franean1_1434 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_1434 
Symbol 
ID5669839 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp1728877 
End bp1731072 
Gene Length2196 bp 
Protein Length731 aa 
Translation table11 
GC content73% 
IMG OID641240355 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_001505782 
Protein GI158313274 
COG category[T] Signal transduction mechanisms 
COG ID[COG4585] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.278277 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTCGCTC AGGATCCGTC GCCGGCGCGG TCAGGGCGTC GACGGGCCGC GCACGTCCTG 
GCCCTGGCCG GGCTCGCGCT GGCCGTCGCC GGCGGGGTGC TGGCCGTGGC CAACCGGCAT
GGGGATCTCA CGCCGTCCGG GGACTCCGCG AGCATGGCGG GCTGGACCCA GGTCGTCCTC
GCGGTTCCGT TCGTGGCGGC CGGATGGCTG CTGGCAGTGC GCCGGCCGGA GGTTCCGTTT
GGTTGGTTGG CTCTGGCCGC CGCGATCGGC CACGGCGCGG CGGCCGCCGG CACAGGCTGG
GCGGTGTTCA CTGTGTTCGG CGGGCGGGAT CTGCCGGGGG CCGCGCCGGC GCTCCTCGCC
GGCTCCACGT GTGGGGCGCT GGAGCCCCTC GTGCTGGTGA TTATCTGGGC GACGTTCCCG
CAGGGACGGT TCCCCCGCGG CTGGATCGGG CGGGTCGCGG CGGTCAGCGT CGGGTTGTGT
GCCGTGGGCT GGCTGAGCGG GCCGCTGTGG TCCTTCAGGT CCGGCGAGTC TCCGCCGGTC
TATGCCGGTC TCACCAATCC GATCGGGGTG GATGCCATCC CCGGTTGGCT GCCGGTCGCG
CTGTTCTCCT CGGGCCTGCT GCTCGGGTCG GCCGTGATGG TGGTCCGCTG GACGCGGGCG
GACGGCGAGC TGCGCCAGGT GCTGCGCTGG CTGGCCGTGA TCAACACGGC CGCGATCGTA
CTCACCCCCG TCGTCGTCGC GCTTCCTGCC GGAGAGCTGA TCGGCAGTGT CGGCACCGTG
GTCGAACTCG TCGTCGTCGT CGCCGTGGTG CTCGCGAACC GTGTCTACGG CATCGAGGCG
GTCCTCAACC GCACGCTCGT ATACACGCTG CTCACCGCGT TCGTGGCCGT CGTGTACGCG
GCCGGCGTCG CGGTCCTCGC CGCGTTCGGC CAGCAGGTGG GCGGGACGTC CACGGTGCTC
GCCGCGGTCG GCGCGGCGTT CAGCCTCGCC CCGGCACGCG ACCGGGTGCA ACGCATGGTG
AACCGCTTTC TCTACGGCGA ACGCGACGAG CCGTACACCG TGGTGACCGG GGTGGCGGCG
CGCCTGGAAG CGGCGGGCAG CGTACAGACC CTGCTGCCGG GCCTGCTCGA AGCCCTGGTC
GGGGCGCTGC GGCTGCCGTC TGCCGCGGTG GAGATGCGCG GCGACGACGG TTCCGCCCGT
TCCATCACCC ACGGCGAGGC CGCGCGGCCG GGCGCGTCGG TCCGCTTCCC GCTGGTGCAT
CAGGGGCAGG ACATCGGCGC GCTCGTCGTC AGCCTGCGGG CCGGGCAGAA CGCGCTGGCT
CCGCGGGAGA ACCGCCTGCT CACCGACATC GCCCGCCAGG TCGCGGTGGC CGCCAGCAAC
GTGCAGCTCA CCGAGGCGCT GATGCGCTCG CGCGAGCGCA TCGTCAGCGC GGCGGAGGAG
GAACGCCGCC GGCTGCGCCA CGACCTGCAC GACGGTCTCG GACCCACGCT GACCGCCGCC
GCGACCAAGG TGGACGCCGC CGGCAACCTC GTCGACCGGG ACGTGGCGCG GGCCAGGAAC
CTGCTCGACT CGGTCCGGCG GGACCTCACC TCGGCCCTCG CCGACCTGCG CCGCCTGGTC
TACGCCCTGA GGCCGCCCGT CCTCGACGAA CTCGGGCTGC TGCCCGCGCT GCGCGAGCAG
CTTCGGCACG CCGCGGTCCC GGTCGTGGTG TCGGCGCCCG AATCCCTGCC GCCGCTGCCG
GCGGCGGTGG AGATCGCCGC TTACCGGATC ATCACGGAAG CCATCACGAA CGTCACCCGG
CACGCCCGGG CGTCGTCCTG CGAAGTGTCG ATCACCTGCG TCGATCACCT GCGTGTCGAG
ATCCGCGACA ACGGAACAGC CGGAGACGGC GCGACAGGAG ACGGCGCGAC AGGCGACACC
GCGACAGGCG GCACCGCGAG CGGGAGCGGG AGCGGAGCAA CATGGGCACC CGGGGTCGGC
CTGACCTCGA TGCGGGAACG GGCGACCGCG CTCGGTGGCA GCTGGATCGC CGGACCCACC
GCTACCGGCG GCCGGGTCCT GGTAGAACTC CCCCTCTCCC TCGCCGGAAG CGCGATACCC
CGGTCCGCCG CCGTGGTCGC TCCAGAAAGG GATCACGGAT CTTCTTCATC CGCGCACACC
GACGTCACCG GAATGCTCAC GAGGAGCCAG CAGTGA
 
Protein sequence
MFAQDPSPAR SGRRRAAHVL ALAGLALAVA GGVLAVANRH GDLTPSGDSA SMAGWTQVVL 
AVPFVAAGWL LAVRRPEVPF GWLALAAAIG HGAAAAGTGW AVFTVFGGRD LPGAAPALLA
GSTCGALEPL VLVIIWATFP QGRFPRGWIG RVAAVSVGLC AVGWLSGPLW SFRSGESPPV
YAGLTNPIGV DAIPGWLPVA LFSSGLLLGS AVMVVRWTRA DGELRQVLRW LAVINTAAIV
LTPVVVALPA GELIGSVGTV VELVVVVAVV LANRVYGIEA VLNRTLVYTL LTAFVAVVYA
AGVAVLAAFG QQVGGTSTVL AAVGAAFSLA PARDRVQRMV NRFLYGERDE PYTVVTGVAA
RLEAAGSVQT LLPGLLEALV GALRLPSAAV EMRGDDGSAR SITHGEAARP GASVRFPLVH
QGQDIGALVV SLRAGQNALA PRENRLLTDI ARQVAVAASN VQLTEALMRS RERIVSAAEE
ERRRLRHDLH DGLGPTLTAA ATKVDAAGNL VDRDVARARN LLDSVRRDLT SALADLRRLV
YALRPPVLDE LGLLPALREQ LRHAAVPVVV SAPESLPPLP AAVEIAAYRI ITEAITNVTR
HARASSCEVS ITCVDHLRVE IRDNGTAGDG ATGDGATGDT ATGGTASGSG SGATWAPGVG
LTSMRERATA LGGSWIAGPT ATGGRVLVEL PLSLAGSAIP RSAAVVAPER DHGSSSSAHT
DVTGMLTRSQ Q