| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1381 |
|---|
| Symbol | |
|---|
| ID | 5669789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 1671183 |
|---|
| End bp | 1673153 |
|---|
| Gene Length | 1971 bp |
|---|
| Protein Length | 656 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641240307 |
|---|
| Product | Type IV secretory pathway VirD4 protein-like protein |
|---|
| Protein accession | YP_001505734 |
|---|
| Protein GI | 158313226 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTGG AACGCGGCCG ATTCGGTGAT GCCGGCTTGG ACGCGGAGAT CGCAGTGGTC
GCCGTGGCGC TCCTCGTCGC GTCGTCGGCG GCGGCAGTCT GGGCAGGCGC GCAGCTGGCC
GCGTTGGCGT TCGGTGCGCA CCGCCCCCTC GACGTGGGCC TGGGCGACGG GCTGGCCGCG
CTACCTCAGC TGATCGCCGA CCCTGCCCAT CCGGCGCACG CCTGGCCGGC GCGCGCCGCA
GGCGACCTGC CGGGGCAGCT CGGGTACTGG GCGGCGACCG TGGTGCCGCT CGCGGTACTG
GCCATGCTGA GCGGGCTCGC GGCCTTCCTG CTCGTCGGCG ACGGGGTGGG CGTGGCGCGC
CGGCGCCGGA TGGGTATCGA TCCCGAAGCC CGGTTCGCCC GCCCGGCGGA TCTGGCACCG
CTGTGGCTGG GCGGGCCGAC CCGCGGTCGG ATGATCCTGG GCCGGATCGG TGGCCCCCGG
GGACGGCTCG TCGCCACCGA GGACACCAAC CGTCCACTGG ACGCGGCGGT GCCCAGATGG
CGAGCACGAC GGGCAGCCCG TCGCCGCGGG CAGCGCGGCA GCGTGATCGT GCTAGGCCCG
TCCCAGTGCG GCAAGACCGC CGCCCTGGCG ATCCCCGCCA TCCTGGAATG GGACGGCCCG
CTGATCGCCC TGAGTGTGAA GAACGACCTG CTGGGTGCGA CGATCTCCCG CCGTCGGCAG
GTCGGCGACG TCGCGGTGTT CGACCCGGCG GGCGTCACCG GCGAACTCGG CGCGCCCTGG
TCCCCGCTGG GTGCGGCGCG CACCCTGGCC GGCGCGCGCC GCGCCGCCCG CTCGATCGCG
AACGCCACCT CCTGGACGTC GGCCTCGTCG GGCGACATGG GCTTCTGGAC CGCGGCGGCC
GAGGACCTCC TCGGCCAGCT GTTCTGGACC GCCGCCGTCG TCGACCTGGG CATGGACACC
GTCGTGAGCT GGGTGGTGTC CATGGACAAG GAGACCGTCC GCGGCCTGCT GACCCCGCTG
GCCTCCCACC GCGACCCGAC ACTCGCCGCG GACGGTACGC AGGTCCTCGC CGGCTTCCAG
GGGATCTGGG CGAACGACCG CCGGCAGATC TCCTCCACCT ACCTGGTGGC CCGGCAGATG
ATCCAACCCT GGCAGGAACC GGAGATCGCT GCCTCCGCCA CGGCGTCGCA TCTTGATCTT
GAATGGCTCC TCGACACCGG CCCCGACGGG CAGGCTGCGA ACACGCTGTA CCTGAGCGCG
GATCTCGACG ACGCAGAACG CCTGGCCCCC GTGCTCGGTG GCCTGCTCGA CGACCTGATG
CGCCAGGCCT ACAGCCACGT CGGGCGAACC GGCGTCCCGT TGGACCCGCC GCTGCTGGTG
GTCGTGGACG AAGCCGGGAA CTGGCCGATG CGCAACCTAC CGGGACGGAT CTCCACCTGT
GCCGGCATCG GTATCCAGCT GGTGCTGGTG TATCAGAGCA AGGCGCAGAT CGACGCCGCC
TACGGCCCGA AAGCCGACAT CGTCATCTCC AACGCGGTCA CCAAGGTCTT CTTCGCCGGC
CAGTCCGACC GCTCCACGCT CGAGTACGCC GCCGGCCTGC TCGGCCAGGA GCATGTCGTC
CAGACGTCCA CCAACGTCGA CAGCACTGGT CTGGTCGGCC CGTCCGGCCG GCGCGGGGTC
TCGCGCAGCC CCACCCGGGT GGAGCTGCTG CCCTCCGCGC TGCTGCGGCA GGTCGCCCCC
GGCCAGGCGC TGCTCGTCCA CAACACCCTT CCGCCCGCCC ACCTGTTCGG CCGCTACTGG
TACCTGGACG AGGACCTGCA CGCACTCGCC ACCGGCCACC GGACCTCCCG ACGCGACCTG
GTCCGCCAGG CCGCCCGCCA GCGGATCACT CCCGGGAACA GCCCTGACCG GCCGCCGCCC
CCAACCGCCT CTGGGGATGA ACAATCGGCG GCTCCGTGGT GGCCCTGGTG A
|
|---|
| Protein sequence | MSVERGRFGD AGLDAEIAVV AVALLVASSA AAVWAGAQLA ALAFGAHRPL DVGLGDGLAA
LPQLIADPAH PAHAWPARAA GDLPGQLGYW AATVVPLAVL AMLSGLAAFL LVGDGVGVAR
RRRMGIDPEA RFARPADLAP LWLGGPTRGR MILGRIGGPR GRLVATEDTN RPLDAAVPRW
RARRAARRRG QRGSVIVLGP SQCGKTAALA IPAILEWDGP LIALSVKNDL LGATISRRRQ
VGDVAVFDPA GVTGELGAPW SPLGAARTLA GARRAARSIA NATSWTSASS GDMGFWTAAA
EDLLGQLFWT AAVVDLGMDT VVSWVVSMDK ETVRGLLTPL ASHRDPTLAA DGTQVLAGFQ
GIWANDRRQI SSTYLVARQM IQPWQEPEIA ASATASHLDL EWLLDTGPDG QAANTLYLSA
DLDDAERLAP VLGGLLDDLM RQAYSHVGRT GVPLDPPLLV VVDEAGNWPM RNLPGRISTC
AGIGIQLVLV YQSKAQIDAA YGPKADIVIS NAVTKVFFAG QSDRSTLEYA AGLLGQEHVV
QTSTNVDSTG LVGPSGRRGV SRSPTRVELL PSALLRQVAP GQALLVHNTL PPAHLFGRYW
YLDEDLHALA TGHRTSRRDL VRQAARQRIT PGNSPDRPPP PTASGDEQSA APWWPW
|
|---|
| |