| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1339 |
|---|
| Symbol | |
|---|
| ID | 5669750 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 1611132 |
|---|
| End bp | 1612844 |
|---|
| Gene Length | 1713 bp |
|---|
| Protein Length | 570 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641240270 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001505697 |
|---|
| Protein GI | 158313189 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGGCC CGCGTCGCCA GCGGGCGCAC GCCCGCCATC GAGCGGGGCA TCGACCCTGG
ACTTGTCCCG GCCGTCGCCC GGGGTGTCGC GAGCACGGCC GCAGCGGTCC GGCACCAGTT
AGCTACCGTG ACGCACGCCG CGGTGTACGG CTTACGGTCG GCGTGCTGGC GGTGGTGAGC
ATTCTCGGAT TTGCGGTGTG GACGTTCGTC GACCGTTCGT CTTCGCCGGA GGCCCTTGCT
GCTTCGGTTG TCGCCTCTAC GGCGGATGAT CCGGATTGCC GCACGGCCAC CGCGACCTTC
ACGGACGTTT CGGTGCCCGG GTATGGCGGC CCGGCGCCCG CAGGCTGGCA GCCAGCTCAG
CGCTGCCCAT CCGATAGTCG GCTGGGGGCG CGATCGCCGG AGAGCGGTTT CGCAGCCCAG
CCGGCGCAGA TTCCGGGAAT CGGCGGGATT GTTGGTGGTC TGGTGGGCGG AGGCATCACG
GGGGTTATGG AAACGGCGGT CGAAACCGTA GTGAACCGGG TGTCGCAGAA TCTGGTTGAC
GCGGCCAAAA GTATGATCCT CGAGTTCCTC GGGGCATCGA CCCGGCCGCA GGTGACAGCA
GAGGAGTTTA TCGGCCCTCA CGGTGCGTAC CACAGCACGG CATCGATGGC CACTCTGCTG
CTCGTCGGAT GCGTGATGAT CGGTGTTGGG CAGGGACTCT GGTCTGGCGA GCCGGTCCAG
GCCATGCTGC GACTTCTTGG CGATATACCC GTCGCGGTAC TGGCCATACT GGGTTTTCCG
TGGGTCGTGG ATCAGCTGGT CACGATTTCC GATGTGATGG CCGACTGGGT GCTCGGGAAC
GACCTTCGTA CCAGGAATGA GATCCTCGAT CTGGTCGTGC CTTTCTCTGG CGGCCCAGAC
GGTAACGTCG GGTATCTGAT CCCCCGGATC TTCGTGTATC TCGGGGTCGC CTTGATATAC
CTGGAACTCG TCGTGCGGAA CGGTCTGATC TACATGGTCG TCGCGCTTGC CCCGCTGTCA
TTCATGGCGA TAACGATGTC AGGGGCTAAA TTGGCGGCGC GGAAGGCTGT CGAAATGGTT
GTCGCCATAA TTTTGATCAA GCCGGCGGTA TTCGTCGAGC TACGGGTAGG GCTCGACCTC
GCTCATCCGG GTCTCGGTAG CCCGGCGGCC GATGGTGATG CGTGGGGAGA AATCTTTGTC
GGCATGGCGA TCGTGTTTAT CGCCGCGTTC ATGCCATGGA TCATCTGGCG CCTCATGCCC
CTGATGGAAC ATGCGATGGT CGCACAAGGA GTTGCCCGAG CGCCGTTCCG CGCTGGGATG
CAGGCCATGC AGATGGTGTA CTTCGGGTCC GCGCTGGCCG GGCGCGGCGC CCGCGGTGGA
GCAGGCGGTG GACGCGGCAG GGTGTTCGGG CAGCAGCCAG CCGGCGCTGG AGGCGGAGGC
GGGTTCGGCC CGCCTCGGAG TCTGACCGGT ACGGGTGCCT CCGCGAACGG CCCAACCCGC
CCGATGACAC GTGACAGCTC TGGCGCGGGC AGTGAACGGC GCGGAACTAG GCGGGCAGAG
ACACCTTCTT CGTCGAAGCC GCCGTCTGGT CCGGACCTGG GGGAGCGTTC GCTGGGTGAT
CCGCGGTCTG GCGGGCGCGT TCGGCGGGGC GAGCCTCCGC CTGCTCCGCC CGGTGACCGG
CGAGGACCCG AAAGTCCGCG GGGCCGGTCA TGA
|
|---|
| Protein sequence | MTGPRRQRAH ARHRAGHRPW TCPGRRPGCR EHGRSGPAPV SYRDARRGVR LTVGVLAVVS
ILGFAVWTFV DRSSSPEALA ASVVASTADD PDCRTATATF TDVSVPGYGG PAPAGWQPAQ
RCPSDSRLGA RSPESGFAAQ PAQIPGIGGI VGGLVGGGIT GVMETAVETV VNRVSQNLVD
AAKSMILEFL GASTRPQVTA EEFIGPHGAY HSTASMATLL LVGCVMIGVG QGLWSGEPVQ
AMLRLLGDIP VAVLAILGFP WVVDQLVTIS DVMADWVLGN DLRTRNEILD LVVPFSGGPD
GNVGYLIPRI FVYLGVALIY LELVVRNGLI YMVVALAPLS FMAITMSGAK LAARKAVEMV
VAIILIKPAV FVELRVGLDL AHPGLGSPAA DGDAWGEIFV GMAIVFIAAF MPWIIWRLMP
LMEHAMVAQG VARAPFRAGM QAMQMVYFGS ALAGRGARGG AGGGRGRVFG QQPAGAGGGG
GFGPPRSLTG TGASANGPTR PMTRDSSGAG SERRGTRRAE TPSSSKPPSG PDLGERSLGD
PRSGGRVRRG EPPPAPPGDR RGPESPRGRS
|
|---|
| |