| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1332 |
|---|
| Symbol | |
|---|
| ID | 5669743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 1601904 |
|---|
| End bp | 1605104 |
|---|
| Gene Length | 3201 bp |
|---|
| Protein Length | 1066 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641240263 |
|---|
| Product | lantibiotic dehydratase domain-containing protein |
|---|
| Protein accession | YP_001505690 |
|---|
| Protein GI | 158313182 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.591859 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGACATCC GGGGCGGCCC GCTGGCCTGT GCGCCCCTCG ACGCCGCGCT TTTCCGTGCT
GCCGTTATGT CGGACGAGTC AGCGAAGGCC CTGGCCGCAG GTTCCTGGCC GGGCGCGAAC
TGCGACGACG TGGACCGCTG GTGCACCTGG CTGGCCGACG TCTGGGCGCA GCCGGCCGTC
GCAGAGGCGA TCGATACCGC GAGTCCGGCG CTGGCTGTCG GCGTGGAGGA CGCGTGCCGG
GGATCCAGAC CGTCCGTGCG GCGGGTCCGG CGGCTGGGGT TGGCGGTGGC GCGCTATCTG
GTGCGGATGA GCCGACGTGC AACGCCATTC GGGTTGTTCG CCGGTGTGGC CCCACTGCGC
TTCGACGTGG AGCCCGTACT GCGGTGGACT GGAAGTGATC GCCCCTACCC GCGTGTGGAC
TCGGTGTGGC TGGCCGCGGT CGTCGCTCGG CTGGAGTCCA TGAGCAGTGT CCGTGCGGCG
CTGACCGTCG TCGCCAACGA CTTGGCCATG GTGCGCGGCG AGCGGCTTGT CGTTCCGTGG
CGCCCGCATG CACACCCGCC GACGGAGACC TTCCTTCCTG CCGAGGTCTC GGTCCGCCAC
GGCCGACCGG TTCAGGCTGC CGTGGCGTCG GCAGCGGCCC CCGTCCGATT TGTAGATCTT
GTCGATTCGG TGGTGGTCGC GCTCGGTCTC TCTCGGCCTG GCGTTGAGGA GATGCTGGCC
CAACTGCTGA CGTGCGGAGT GCTCGTGAGC AGCCTGCGGC CACCTGCGAC GTGCACGGAC
GGCGTTGCCC ACCTTCTCGA TGCGCTGAAC GGCATCGAGA ACACGCGCGT ACCGGCCGCC
ACCGACCGGA CTGACGACAG CACCAGCGAT CCCTCACACG GCCTTGTCGG TGATCTTCGG
ATGATCCAGG CGGAGCTAGG GGCGGCACGC GATGCGGACA GCTCGTTGGG ACGTCCACGT
CTGGCCGCCC TTCGTGAGCG GATGCGGGCG GTATGCGCGG TGGTCGAGCA GCCGCTCGCG
GTCGACCTGC GGTTGGACTG CACGGCGGTG TTGCCGGAAC TCGTGGCGGT CGAGGCCGCT
GCAACGGCGG GAGCACTGTT GCGACTGACC CCGCACCCGG CTGGCAACCC GTCCTGGCGG
GACTACCACC ACAGGTTCCT TGCCAAGTTC GGTGAATCGG CGCTGGTCCG AGTCGATCAG
CTGGTTGACC CGGTGATCGG CCTGGGCTAC CCGGCGCACT TCGGCGTCGC GGAACCACCG
CCTACCGGCG GTGTATCGCC TCGGGACGAG TACTTGCTGC AGCTCGCCCA GCGCGCGGCG
TTCGACGGCC AGCAGGAGGT CGTCCTGGAC GAGGCCGCTC TTGACACCAT GTCGGCGCAG
ACGGCTGGGT CCTGGCCAGA GCCGCATGCG GAGATATGCG TCGAGGTGCT GGCACCGTCG
ATGGCGGCCC TGTCCCAGGG CGCGTTCACC CTGCTGGTCA CCGGTGTCAG CCGCACCGGG
GCAGCGATGA GTGGCCGCTT CCTCGATCTG CTCCCCGAGG CTGACCGGCT CAGGATGATC
GATGTCTTCC GTCGGTTACC GCCGACGGCG GAAGGCGCGG TGCCGGTGCA GCTGTCGTTC
CCGCCAGCGC ATGCCCGGCT GGAGAACGTC ACCCGCACCC CCCACGTCCT GGCGGACTGG
GTCTCACTCG CCGAGCACCG CGACAGCCAG CGCGGCAGGC TGCCGTGGAC GGACCTGGCG
GTCACCGCGA ATGACGAACA GCTCCACCTG GTTTCGCTGT CCCGCGGTGC CGTCGTCGAG
CCGTTGTTGA CGAATGCCGC CGCCCGGCAG ACCTTCCCGC CGCTCGCGCG GCTGTTGCAC
GAGCTGCCCC GTGCCAGCAG CGGGGCCGTA GCCCCGTTCT CGTGGGGCGC GGCGAGCTGT
CTGCCGTTCC TGCCGAGGGT TCGTCATGGC CGCGCGGTTC TGGCGCCGGC CCGATGGCGA
ATCAACCCAT CCGATCTTCC GGGTCCAGGC GCGGGAGACC AGGAATGGGC CGACGCGCTC
GCACGGTTGC GGGAGCGGTC AGGACTGCCC CGCTGGGTGA GCACCGGCCG GGCGGACGTA
CGGCTGCGCC TGGATCTCGA CGAGCGGATG GATCGCGATC TGCTGCGTGC CGAACTCGAC
CGCGCCGGCG CTCTGACCGC CCTCGAGGCT CCGGGCCCGG ACGACTATGG CTGGGCCGAC
GGCCGAGCCC ACGAGATCGT CGTCCCGGTG GCGACCACCG CCGCCCCGCG ACCCGCGCCG
GCCATCGTGA CGACGCCCGG CCCGATGCCA GTGAGCGACG CGACCTCCGG GATCCTGCCG
GGATCGAGGG TGCTCTTCGC GAAGCTGTAC TGCCATCCGG ACGTCGTCTC CACCATCCTC
ACCGACCATC TGCCCGCGCT GCTCGACGCC TGGGGCGTCC CTCCGCAGTG GTGGTTCATC
CGATACCGCG ACCCCGCCTC ACACCTACGC CTGCGACTGC ACGTCGCGCC CGACGCCGAC
GGCGTCACCG ACAGCTACGG ACGAGCGGCA GCTCGGGTCG GTGCATGGGC GGAGCAGCTG
CGGGCACGAC GTCTCATCGG CGATCTCGTG CTCGACACCT ACCACCCCGA GACAGCCCGC
TACGGCGACG GCGAAGCACT CGTCGCAGCC GAGCACCTGT TCGCCGCCGA CTCGGCCGCC
GTCGTCATCC AGTTGGCCGC CCAGAACGCG AACCGGGCAC TTCACCCTGC GGCGTTGACC
GCAGTGAGCA TGGTCGACCT GACGTGTGCG TTGCTCGGCG GCAGACAGAC GGGGATGCGG
TGGCTGCTGG AAAACCGGCG GGCCTCCGGA GCACCCACCC AGCGGCCGGT GCTGCGCCAG
GCCATCGCGC TGTCCCGCAC ATGTGATGAC GAGCCCGCGC CCAACGCCGC GATCCCGCAG
CTCCCGGCGC CGTTACGGGC CGTGTGGGGT GTGCGGCGCC GGGCGGCCGA GCGGTATGCG
GCCCAGCTCG CCGCGTTGCC GGGCCTGCCC GCCAGCAGCG AGGTACTGGG ATCACTGCTG
CACCTGCACT ACGTCCGCTC TCATGGCATC GACTCGTCAG CGGAGCGCAC CTGCCACCGT
CTCGCCCGCG CGGTCGCGCT CGCCTGGCAC AACACCGGCC AGCACCCCCC TCTCGACCTC
GCCAGAGCGG AAGGCCCATG A
|
|---|
| Protein sequence | MDIRGGPLAC APLDAALFRA AVMSDESAKA LAAGSWPGAN CDDVDRWCTW LADVWAQPAV
AEAIDTASPA LAVGVEDACR GSRPSVRRVR RLGLAVARYL VRMSRRATPF GLFAGVAPLR
FDVEPVLRWT GSDRPYPRVD SVWLAAVVAR LESMSSVRAA LTVVANDLAM VRGERLVVPW
RPHAHPPTET FLPAEVSVRH GRPVQAAVAS AAAPVRFVDL VDSVVVALGL SRPGVEEMLA
QLLTCGVLVS SLRPPATCTD GVAHLLDALN GIENTRVPAA TDRTDDSTSD PSHGLVGDLR
MIQAELGAAR DADSSLGRPR LAALRERMRA VCAVVEQPLA VDLRLDCTAV LPELVAVEAA
ATAGALLRLT PHPAGNPSWR DYHHRFLAKF GESALVRVDQ LVDPVIGLGY PAHFGVAEPP
PTGGVSPRDE YLLQLAQRAA FDGQQEVVLD EAALDTMSAQ TAGSWPEPHA EICVEVLAPS
MAALSQGAFT LLVTGVSRTG AAMSGRFLDL LPEADRLRMI DVFRRLPPTA EGAVPVQLSF
PPAHARLENV TRTPHVLADW VSLAEHRDSQ RGRLPWTDLA VTANDEQLHL VSLSRGAVVE
PLLTNAAARQ TFPPLARLLH ELPRASSGAV APFSWGAASC LPFLPRVRHG RAVLAPARWR
INPSDLPGPG AGDQEWADAL ARLRERSGLP RWVSTGRADV RLRLDLDERM DRDLLRAELD
RAGALTALEA PGPDDYGWAD GRAHEIVVPV ATTAAPRPAP AIVTTPGPMP VSDATSGILP
GSRVLFAKLY CHPDVVSTIL TDHLPALLDA WGVPPQWWFI RYRDPASHLR LRLHVAPDAD
GVTDSYGRAA ARVGAWAEQL RARRLIGDLV LDTYHPETAR YGDGEALVAA EHLFAADSAA
VVIQLAAQNA NRALHPAALT AVSMVDLTCA LLGGRQTGMR WLLENRRASG APTQRPVLRQ
AIALSRTCDD EPAPNAAIPQ LPAPLRAVWG VRRRAAERYA AQLAALPGLP ASSEVLGSLL
HLHYVRSHGI DSSAERTCHR LARAVALAWH NTGQHPPLDL ARAEGP
|
|---|
| |