| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1277 |
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| Symbol | sdhA |
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| ID | 5669690 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 1538940 |
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| End bp | 1540904 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641240209 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001505637 |
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| Protein GI | 158313129 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01811] succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.157042 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.449147 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGAGA CGACCTCCCT CGGCTCTGGC GGAGGCTCCT ACTGGACGGT GGGCGACGAC
ATCGTCGACA CCGCCGCCCC GGACGGCCCG ATCGAAACCC GCTGGGACCG GCGCAAGTTC
GCCGCCAAGC TGGTCAACCC CGCCAACCGC CGCCGCCACA CCGTGATCGT GGTCGGTACC
GGCCTCGCCG GCGGCGCGGC CGGCGCGACC CTGGCCGAGC AGGGTTACAA GGTCATCCAG
TTCTGCTTCC AGGACTCGCC CCGGCGCGCG CACTCGATCG CCGCGCAGGG CGGCATCAAC
GCGGCGAAGA ACTACCGTAA CGACGGCGAC TCCGTCTACC GGCTGTTCTA CGACACGGTC
AAGGGCGGCG ACTTCCGCGC CCGCGAGTCC AACGTCTACC GGCTCGCCCA GATCTCGACG
CAGATCATCG ACCAGTGCGT CGCGCAGGGC GTGCCGTTCG CCCGCGAGTA CTCCGGCCTG
CTCGACACCC GCTCCTTCGG CGGCGTGCAG GTCCAGCGCA CCTTCTACGC GCGGGGCCAG
ACGGGCCAGC AGCTGCTGAT CGGCGCCTAC CAGGCGCTGT CCCGCCAGAT CGACGCCGGC
GGTGTGGAGA TCCACCCCCG CACCGAGATG CTCGACCTGA TCGTCATCGA CGGCAGGGCC
CGCGGCATCG TCGCCCGCGA CCTGGTCACC GGCAAGATCA CTCCGTACCT GGCGGACGCG
GTCGTGCTCG CCACCGGCGG CTACGGCAAC GTCTTCTTCC TCTCCACCAA CGCCAAGGGC
TCCAACACCA CGGCGACGTG GCGGGCCCAC CGGCGCGGGG CGCTGTTCGC CAACCCCTGC
TACACGCAGA TCCACCCGAC CTGTATCCCC CGTTCCGGGG AGTACCAGGG CAAGCTCACG
CTGATGAGCG AGTCGCTGCG CAACGACGGC CGCATCTGGG TGCCCAAGCA GAAGGGTGAC
ACCCGCTCGC CGGACCAGAT CCCCGAGGCC GAGCGCGACT ACTACCTGGA GCGGATCTAC
CCGGCCTTCG GCAACCTGGT CCCGCGTGAC ATCGCGTCGC GCGCGGCGAA GTACCAGTGC
GACGACGGCC GCGGCGTCGG CCCGGGTGGG CTCGGTGTTT ACCTCGACTT CGCCGACGCC
ATCAAGCGCA TGGGCGAGGA CAAGGTCCGC GAGAAGTACG GCAACCTGTT CGAGATGTAC
GAGCGGATCA CCGGCGAGGA CCCGTACAAG GTCCCGATGC GGATCTACCC GGCCGTCCAC
TACACGATGG GCGGGCTGTG GGTCGACTAC GACCTGCAGA GCTCCATCCC CGGGATGTTC
GTGATCGGTG AGGCCAACTT CTCCGACCAC GGCGCGAACC GCCTCGGCGC CAGCGCCCTC
ATGCAGGGCC TGGCCGACGG CTACTTCGTC CTGCCGCCCA TGATCGGCAA CTACATCGCC
AGCACCAAGC TGGGCTCGGT CAGCCTGGAC GACCCGACGG TGACGTCCGT CGTCGGCGAG
GTCACCGGCC GGCTCGGCCG ACTGCTGGAG ATCAACGGCG ACCGCACGCC CGACTCGTTC
CACCGCGAGC TCGGCGAGCT CATCTGGGAC GAGTGCGGCA TGGGCCGCAC CGAGGTGGGC
CTGCGCAAGG CGCTCGCCCG CATCCCGGAG CTGCGTGAGG AGTTCTGGCG GCGGGTGAAG
GTGCCGGGCG ACTCCGGCGA GCTGAACCAG TCGCTGGAGA AGGCGAACCG GATCGCGGAC
TTCCTCGAGT TCGGCGAGCT GCTGTGCATC GACGCCCTGC ACCGCGCCGA GTCCTGCGGC
GGCCACTTCC GCGAGGAGAG CCAGACCCCG GACGGCGAGG CGCTGCGCGA CGACGAGCAC
TTCGCCTACG CGGCGGCGTG GGAGTACACC GGCGGGGCCC CGGTGCTGCA CCGGGAGCCG
CTGCAGTTCG ACTACGTCCA CCTGGCCCAG CGCAACTACT CGTGA
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| Protein sequence | MPETTSLGSG GGSYWTVGDD IVDTAAPDGP IETRWDRRKF AAKLVNPANR RRHTVIVVGT
GLAGGAAGAT LAEQGYKVIQ FCFQDSPRRA HSIAAQGGIN AAKNYRNDGD SVYRLFYDTV
KGGDFRARES NVYRLAQIST QIIDQCVAQG VPFAREYSGL LDTRSFGGVQ VQRTFYARGQ
TGQQLLIGAY QALSRQIDAG GVEIHPRTEM LDLIVIDGRA RGIVARDLVT GKITPYLADA
VVLATGGYGN VFFLSTNAKG SNTTATWRAH RRGALFANPC YTQIHPTCIP RSGEYQGKLT
LMSESLRNDG RIWVPKQKGD TRSPDQIPEA ERDYYLERIY PAFGNLVPRD IASRAAKYQC
DDGRGVGPGG LGVYLDFADA IKRMGEDKVR EKYGNLFEMY ERITGEDPYK VPMRIYPAVH
YTMGGLWVDY DLQSSIPGMF VIGEANFSDH GANRLGASAL MQGLADGYFV LPPMIGNYIA
STKLGSVSLD DPTVTSVVGE VTGRLGRLLE INGDRTPDSF HRELGELIWD ECGMGRTEVG
LRKALARIPE LREEFWRRVK VPGDSGELNQ SLEKANRIAD FLEFGELLCI DALHRAESCG
GHFREESQTP DGEALRDDEH FAYAAAWEYT GGAPVLHREP LQFDYVHLAQ RNYS
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