| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1271 |
|---|
| Symbol | |
|---|
| ID | 5669684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 1528864 |
|---|
| End bp | 1530831 |
|---|
| Gene Length | 1968 bp |
|---|
| Protein Length | 655 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641240203 |
|---|
| Product | polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_001505631 |
|---|
| Protein GI | 158313123 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.424952 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGAGAC GTAGAGTAGA CGGACGACGT CACGGTCTGT GGACAACAGC GGTTGCGCGG
CGCGTGTCGC GACTCAACCT CCAGCAACGG GTCGGTCTGC AGATCGTGCT GGACGTCTGC
GCGCTCGCGC TCGGGTTCAT CGCCGCTCAG GTCGGCCGAC TCGACCTGGA CCCGGCCGCG
CTCACCGATC CGGGCTTCTG GGTCATCGTC TTCCTCGCCG TGTGCCTGCT CCACTTCCTG
GGCACGGCGC TGCACCTCTA CCTGGGCCGG TACCGGTTCG GCGGGTTCGA GGAGGTGTTC
GGCATCCTGG TCGCGGTGGC TCTCACCGTC CTCGGGGTGC TCGTGGTGGT GCTGGCGGTC
GGCGTGCCGC GGCCGGTACC GCTCAGCGTG CCGCCGCTGG GCGGGGCGGT CACCCTGGTG
CTGATGCTCG GCATCCGCTA CCTGTGGCGG CTGGCCGAGG AGCGGCTGCG CCGGCCGGCC
CCCGACGCCA CCGAGCCGCT GATCGTCTTC GGCGCGGGCG ACGGCGGGCA GCGGGTGCTC
ACCGCGATGC TGCGCACGCC GAGCAGCCCC TACTACCCGG TCGCGCTGCT CGACGACGAC
CCCCGGACCT GGAACCTGCA GCTGTCCGGG GTGCGGGTCC GCGGCGGCCG GGACGCGATC
GCCGGCGTCG CCGCCTCCAC CGGCGCACGC ACCCTGCTCG TCGCGATCCC GAGCGCGGAC
GCGGCGCTGC TGCGGGAGAT CAGCGCGCTG GCCGAACCGG CCGGTCTCGC CGTCAAGGTG
CTCCCCCGCG TCGCAGACCT GGTGGACGGC ACCGTCGGCG TAGCGGACAT TCGCGATCTC
GACCTCGCCG ACCTGCTCGG CCGCCGGCAG ATCCAGACCG ACATGACGGC CGCCGAGCGC
TACCTCACCG GCCGCCGGGT CCTCGTGACC GGCGCCGGCG GGTCGATCGG ATCGGAGCTG
TGCCGGCAGA TCCACGCCTT CGGGCCGGCC GAACTGATCA TGCTCGACCG GGACGAGTCG
GCGCTGCGCG CCGTCCAGCT CTCGCTGCAC GGCCGGGCGA TGCTCGACGA CGACACGATC
GTCCTCGGCG ACATCCGCGA CACCGAGCTC ATGGCCGCGC TGTTCGCCGC CCGCCGGCCC
GAGGTCGTCT TCCACGCCGC GGCGCTCAAG CACCTCCCGC TGCTGGAGCG CTTCCCGGGC
GAGTCGGTGA AGACGAACCT GTGGGGGACG CTGACCGTCC TGGAGGCCGC GGCCGCCTGC
GGGGTGCGGC GCCTGGTGAA CATCTCGACC GACAAGGCCG CCAACCCGAG CAGCGTGCTC
GGCCACTCCA AGCGGATCAC CGAGCGCCTC ACCGCGCACG TCGCGGGCCA GGCGCCGGGG
GTGCTGGTCA GCGTCCGCTT CGGCAACGTG CTCGGCAGCA ACGGCTCGGT GCTGACCGTC
TTCGCCGGCC AGCTCGCCGC GGGCGGGCCA CTGACGGTCA CCCACCCGGA GGTGACCCGC
TACTTCATGA CCATCCAGGA GGCCGTCCAG CTCGTCCTGC AGGCCGGGGC GCTGGGCTCC
GCCGGCGAGG CGCTGGTCCT CGACATGGGG GAACCGGTGC GCATCGCGGA CGTCGCCCGT
CGCATCGCGG CCCGCGCGCC CGCGCCGGTG GACATCGTCT ACACCGGGCT CGGGGCCGGC
GAGAAGCTGC ACGAGGAACT GCTGGGCGCC GGCGAGTGGG ACTCCCGGCC GCGGCACCCG
CTGATCTCAC AGGTACCGGT ACCGCCGCTG GACCCGGCCG CCGTCCGGGA CATCGACCCG
TACGCGGCAC CGGATCTGAT CCGGGCCACG CTGACCCGGC TGGCCGCCGA ACAGCCCATG
CCGAACGTGC CGCGCCAGAC CAATCCAGGT CAGGACGAGC CGCGCCAGAC CGGGCCGCGT
CAGGACGGGC CGCGTCAGGA CGGACCGACC GAGGCGCGGA CCGGGTGA
|
|---|
| Protein sequence | MWRRRVDGRR HGLWTTAVAR RVSRLNLQQR VGLQIVLDVC ALALGFIAAQ VGRLDLDPAA
LTDPGFWVIV FLAVCLLHFL GTALHLYLGR YRFGGFEEVF GILVAVALTV LGVLVVVLAV
GVPRPVPLSV PPLGGAVTLV LMLGIRYLWR LAEERLRRPA PDATEPLIVF GAGDGGQRVL
TAMLRTPSSP YYPVALLDDD PRTWNLQLSG VRVRGGRDAI AGVAASTGAR TLLVAIPSAD
AALLREISAL AEPAGLAVKV LPRVADLVDG TVGVADIRDL DLADLLGRRQ IQTDMTAAER
YLTGRRVLVT GAGGSIGSEL CRQIHAFGPA ELIMLDRDES ALRAVQLSLH GRAMLDDDTI
VLGDIRDTEL MAALFAARRP EVVFHAAALK HLPLLERFPG ESVKTNLWGT LTVLEAAAAC
GVRRLVNIST DKAANPSSVL GHSKRITERL TAHVAGQAPG VLVSVRFGNV LGSNGSVLTV
FAGQLAAGGP LTVTHPEVTR YFMTIQEAVQ LVLQAGALGS AGEALVLDMG EPVRIADVAR
RIAARAPAPV DIVYTGLGAG EKLHEELLGA GEWDSRPRHP LISQVPVPPL DPAAVRDIDP
YAAPDLIRAT LTRLAAEQPM PNVPRQTNPG QDEPRQTGPR QDGPRQDGPT EARTG
|
|---|
| |