| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1241 |
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| Symbol | |
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| ID | 5669654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 1491422 |
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| End bp | 1495720 |
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| Gene Length | 4299 bp |
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| Protein Length | 1432 aa |
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| Translation table | 11 |
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| GC content | 78% |
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| IMG OID | 641240173 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001505601 |
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| Protein GI | 158313093 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00402812 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCACGC CGTACTCCGC GCAGCCCGCC GGCCGGCCGT CCGCCGGCCC TGACGTGCAG
GCCCATGACG CCACTGGCGA CGGGCAGTCC GGGACGGGTG GTCCGGACCC GACGGGTCCC
GGCGGTCGCG ACGGTCTCAA CGGTTCCGGC GGTCTCAACG GTTCCGGCGG TTCCGGCGGT
TTCGGCGGTC TGAGCGGTCC GGGTGGTCTC GGCGGCCCGG GTGGTCTTGG CGGGTCGGGG
GACGTCGGCG GGCCGGGTGC GCTTGGCGGC CTGGGCGGGC TCGGCGCTCC CGGTTCCGAG
TGGGCGGGTG GGAACAGCTG GGCCGGCGGG CCGGTCGGCT GGCCTTCTTA CGCTGACGTC
ACCGGCGGGG CGATGCCCGC CAGCCCGCGG GGGACGCCCT CCGAATGGGA GCCCCTCGTG
GGGGACGGCG CCGCGCCGGC GCCGGCGTCC TCGATCGGCC TGCCGCCGCC CCCGCCCGGC
TCGCCGCCGC CGGGCGAGCC GCCGTCCGCC GGGTCCGGGG GAGTGGGACA ACTACCCGCC
GCAGGCGTTC CCGCCGGTTC ATCGCCGGAC ATCGTGCCGC TGGCCGGGCT GATCCCGGGG
CCGCCGCTGT CGGCGTCACC GCCCGCGGGC GAGAACACGC CGGCGCCGCC GGTGCCCCCG
CCGGGGGAGT CCGCTCCGCC GGCACCACCG CCGACCGTGG CCGCGCCGTC GTCCGAGTTC
CCGCCATCGG GGTCCACTCC TGCAGGGCAG GCCGCTGCCG GGCAGGAACC GCCCGGACAG
GAGCTGTCCG GGCCCGCGGT GGACGGGCCT GCGCCGTCCG GGCGGGTTCC GTCCGCGCAC
GGGCAGGCCG GGCCTGTGGC GTCCGCGTCG CCCGGTGGCG AGCGCGGTTT CCCCGGCGAC
TTCGGGCCCG GTTTCGCGGT CACACCCGGC TTCCCACCCG GGCAACCGCC GCACGGGTCG
GCGTCGTCTG ACTTTGGTAC GCCCTGGGGG CCGCCGGCCC TCGAACCCGG CCCCGGGGCC
GGCCTGGGCG GTTCGGGCGG AGTCGGTGCC ACCGGGGCGG GCCACGACGG GCCGGTCCCG
GCCGGGCCGT CCCACCCGGG CGGTGGCGGG GCGTCCGAGG GCGCGGATCT CGCCGGGCTG
GCGCTGCGGG AGGCCCTGTT CGACCAGGCC CCCGTCGGCC TCGCCCTGTA CGACGCCGGC
GGCCGCTACA TCCGGGTGAA CGACGTCCTC GCGCGGCTCA ACGGCCGCCC GGCCGCCGAG
CACCTGGGCC GCACTATGTC CGAGCTCCTC GGGGAGATCG GCCAGGAGAT GGACGGCCTG
CTGTCCCGTG TCCTGCGCAC GGGCGAGGCG GTGACCGACC TCGAGATCGG AGTCGCCACC
GGCGGCGCCG GCCCGAACCA GACCTGGTCG GCGAGCTGGT ACCCGGCCAC CGACCGGCTC
GGTGCCCGCG CCGGCGCGGT CCTCGTCGCC CTCGACGCGA CCCGCGCGAA GACCGCCGAG
CGGGACCACG CCCGCGCCGT CGGCCGGGAG CGGGCGCTGG GCGAGGCCAC CGCGGCGGAC
GTCTTCCACG CCGGCGAGGA CGGCGCGCTC GACACCGACC TGCCCCGCTG GCGCGCTGCC
ACCGGCCAGA ACGGCGCGCA GGCCGCCGGT TTCGGCTGGC TGGACGCGAT CCATCTCGAT
GACCGGGAGC GGGTCGCCCG GGCCTGGCAC GGCGCGATCG AGCGCCGCGA GCCGTTCGAC
GCCGAGTTCG GTGTCCCGGA CGTCACCGGG ACACACCGGA CGATCACCGC CCGGCTGGTG
CCCGTGGTGG ACGGGCCGCA GGTCGAGTGG ATCGGTGTGC TGACCGACGT CACCGAGGCC
CGTTACGCCC GCGACCCGCG ACCCGCGCAG GACGGCGTGC CGGACGAGGC AACCTGGCGC
CGTGAGCAGT CGTGGCGGCT GACCTCCGCC CTCGGCCGGG CGGTGACCGT CGACGACGTC
GTCGCGGCGG TGCTCGACAG CGGCGGGCGG GCCGCGCGCG CCGTGGGCCG CGGCGTGGCA
CTGATCGACG AGAGCGACGA CCGGCTCCGG TTCCGCTCCC TGGCGGGCAC CTCGGACCAG
TACGCCGAGC GCTGGTCGGA GGTCGGGCTC GGCGCCATCC ACCCGCTCGC CGAGGTCATC
CGCGGCCGGC GGCCGCTGTT CCTGCGTAGC CGCGACGAGC TCGGCGGGCG CTGGCCCGTT
GCCGACCTGC TCGGCGCGGT CGAGTCGGGG CCGGAGCACG CCTGGGCGCT GCTGCCGCTC
GCGACGACCG ACGTGCCCTT CGGCGTCCTC CACCTCGGGT TCCCCTCGCC GCGCGAGTTC
GACACCGACG ACCAGGCGTT CCTGATGGCG ATGGCCGAGC AGTGCGCGCA GGCTCTCGAG
CGCGCGACCC TGTTCGAGCG GCTGGCCGCC GACACCGCGC GCAGCCGGCG GGACCGCGAC
GAGGCCGAGG CCGAGCTGAC GGCGGCGCTG GCGGCGGCGG ACGTCCAGCA GTCGGCGGCG
GGCGCCGCGC GGCGCAGGCT GGAGCAGCTC GCCCGTGCGG GCGAGGCGGT GGCCTCGGCC
ACCAGCCCGG AGCGTGCCCT GTCGGCGCTG GCCGCGGCGG TTGCCGGGGA GATCGCCGAC
GTCTGCGTCA TCCACCTGCT GCCGCCCGCG GACGAGACCG AGACGTCAGC AGCGCCCGGG
TCGCCCGGAT CGCCGGGGTT GCCTGGGTCG CGTCCGGCGG TGTTCGTGGC CCGTGACGGA
CTCACCGCCG CGGCGCCGCC CGGTGCTCCC GCGCTCGTCC TGCCGGGGGC GGGCCCGCTC
GCCGCGGTCG CCGCCGGCGC CGCGCCCGTG CTCCTGCCCG CCAGCCCCGC CGCCCCGTTC
CTGGACGGCG CCCTGACCCC CGAGCTGGCC CGCTGGGTAC GGGAGGCCGA GGGGCACAGC
GCCGCGGCGG TGCCGATCAC GTTCCGGGGT CGCCCGGCCG GCGTGCTGAC GGCGATCGCC
GCCGGTGAGC GCCCCGCCTT CACCACGGAC GACCTGCCCT TCCTGACCGA GGTCGCGGCC
CGCACAGCGC CCGCCCTGGA ACGCGCCGAG GCCGGTGGCC GCGACGGTGG CGACGCGCTG
GCGCTCCAGA AGGCGCTGCT GCCGCGCACC CTGGCCCCGG CGGGCCTCGA CCTGGCCACC
CGGTACCTGC CCGCGGGCGG GGACGACCAG GTCGGCGGCG ACTGGTTCGA CGTCATCGAC
CTCGGCGCCG GGCGGGTGGC GCTGGTCATC GGCGATGTGA CGGGACGCGG TGTGCGCGCT
GCCGCTCTCA TGGGGCAGCT CCGCAGCGCA GTGCGCACCT GCGCCCGGCT GGACCTGCCA
CCGGCCGAGG TCCTCATCCA ACTCGACGGG CTCGTCGCCG ACCTCGGCGA GGACCTGATC
GCCACCTGCA TCTACGCCGT CGTGGAGACC GACACCGGAC TGCTGACCCT CGCCAGCGCC
GGGCACCCGC CGCCCCTGGT GGTCGCCCCG GACGGCCTGG TCTCCCGGCT CTACATGGCG
GCTGCGACCC CGCTCGGCCT CGCCTGCGAC GCGATGACCG AGTACACCGT CTCGCTCGGG
CCCGGCTCGC TGCTGGCCCT GTTCACCGAC GGACTCGTGC GCGGGCGCGG GCTGGACATC
GACGCCGGGG TCTCGAACCT GGCCGCCGTC CTGGCCCGCC CGGCCGAGGA GTGGGACGGC
CGGCTCGACG ACCTGGCCCG GGCCGCCTGC GCGGCGCGGG TCGGCGCGGG CGGCCCGCCG
CCCGGCGACG ACGTCGCGCT GCTGCTGGCC CGGCTGCCCG TGCCGGACCC GCTGGCCGAG
CCGCTGGACG TCTCCGCCGA TCCCTCTGTG GGGCTCAGCC AGGTCCGCGC GCAGGTGCGG
GTGGCGCTGG AGAACGCCCT GACAGAGCCG CCGGTGATCG ACACCGTGGT GCTCGTGCTC
TCCGAGCTCG TCGGCAACGC GCTGGTGCAC GGGCGGGCCC CGCTGTCGGT CCGGGTACGG
CGGATGGCGG CGTCGAGCCC GGCGGGTGCC GGTGCGGCGG GCGGCGGTTC GGCAGGTAGC
GGTTCGGCAG GTAGCGGTTC GGCAGGTAAT GGTGCCCGGC GCATCCTGGT CGAGGTGGGT
GACGCCGGCG GCCGGATGCC CCGCCGCCGC CGGGCCGGTC CCGACGACGA GACCGGCCGT
GGGCTCGATC TGGTCGGCCG GCTCGCGCTG CGCTGGGGCG TGCGGCCCGT CGGCGACGGC
AAGCTGGTGT GGGCGGAGAT CGACCCGAGC CGGGTCTGA
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| Protein sequence | MTTPYSAQPA GRPSAGPDVQ AHDATGDGQS GTGGPDPTGP GGRDGLNGSG GLNGSGGSGG
FGGLSGPGGL GGPGGLGGSG DVGGPGALGG LGGLGAPGSE WAGGNSWAGG PVGWPSYADV
TGGAMPASPR GTPSEWEPLV GDGAAPAPAS SIGLPPPPPG SPPPGEPPSA GSGGVGQLPA
AGVPAGSSPD IVPLAGLIPG PPLSASPPAG ENTPAPPVPP PGESAPPAPP PTVAAPSSEF
PPSGSTPAGQ AAAGQEPPGQ ELSGPAVDGP APSGRVPSAH GQAGPVASAS PGGERGFPGD
FGPGFAVTPG FPPGQPPHGS ASSDFGTPWG PPALEPGPGA GLGGSGGVGA TGAGHDGPVP
AGPSHPGGGG ASEGADLAGL ALREALFDQA PVGLALYDAG GRYIRVNDVL ARLNGRPAAE
HLGRTMSELL GEIGQEMDGL LSRVLRTGEA VTDLEIGVAT GGAGPNQTWS ASWYPATDRL
GARAGAVLVA LDATRAKTAE RDHARAVGRE RALGEATAAD VFHAGEDGAL DTDLPRWRAA
TGQNGAQAAG FGWLDAIHLD DRERVARAWH GAIERREPFD AEFGVPDVTG THRTITARLV
PVVDGPQVEW IGVLTDVTEA RYARDPRPAQ DGVPDEATWR REQSWRLTSA LGRAVTVDDV
VAAVLDSGGR AARAVGRGVA LIDESDDRLR FRSLAGTSDQ YAERWSEVGL GAIHPLAEVI
RGRRPLFLRS RDELGGRWPV ADLLGAVESG PEHAWALLPL ATTDVPFGVL HLGFPSPREF
DTDDQAFLMA MAEQCAQALE RATLFERLAA DTARSRRDRD EAEAELTAAL AAADVQQSAA
GAARRRLEQL ARAGEAVASA TSPERALSAL AAAVAGEIAD VCVIHLLPPA DETETSAAPG
SPGSPGLPGS RPAVFVARDG LTAAAPPGAP ALVLPGAGPL AAVAAGAAPV LLPASPAAPF
LDGALTPELA RWVREAEGHS AAAVPITFRG RPAGVLTAIA AGERPAFTTD DLPFLTEVAA
RTAPALERAE AGGRDGGDAL ALQKALLPRT LAPAGLDLAT RYLPAGGDDQ VGGDWFDVID
LGAGRVALVI GDVTGRGVRA AALMGQLRSA VRTCARLDLP PAEVLIQLDG LVADLGEDLI
ATCIYAVVET DTGLLTLASA GHPPPLVVAP DGLVSRLYMA AATPLGLACD AMTEYTVSLG
PGSLLALFTD GLVRGRGLDI DAGVSNLAAV LARPAEEWDG RLDDLARAAC AARVGAGGPP
PGDDVALLLA RLPVPDPLAE PLDVSADPSV GLSQVRAQVR VALENALTEP PVIDTVVLVL
SELVGNALVH GRAPLSVRVR RMAASSPAGA GAAGGGSAGS GSAGSGSAGN GARRILVEVG
DAGGRMPRRR RAGPDDETGR GLDLVGRLAL RWGVRPVGDG KLVWAEIDPS RV
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