Gene Franean1_1239 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_1239 
Symbol 
ID5669652 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp1487359 
End bp1488666 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content76% 
IMG OID641240171 
Producthistone deacetylase superfamily protein 
Protein accessionYP_001505599 
Protein GI158313091 
COG category[B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.127152 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00245204 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGCGGGACG TCGCGCGGAG CTACCGTCGT CGTGTGAGCA CGTCCGCGAA CACCGAGCCC 
TCGCCGGCCG CGCCCGGAGC GGGTGCGCAG GCCCTCCTCA TCTGGGACAG GGCGATGCTC
GACTACGACT TCGGCCCGAC CCATCCGCTG CACCCGGTGC GGCTCGCGCT GACGATGGAT
CTCGCCGGCG CCGTCGGCCT GCTCGACGCC CCGGGGATCA CCGTCGCCTC TGCGGGGATG
GCCGGCGACG ACCTGATCGA GCTCGTCCAC GACCCCGCCT ACCTCAGTGC GGTGCGCGCG
GCGTCGCCGG GGTCGCGGGC CGGGTCGCTG CTGGCGGGCC GCTTCGGGCT GGGCACCGCC
GACAACCCGG TCTTCGACCG GATGCACGCC GCCGCCGCGC TGGTGACCGG CGGGACGCTC
GCCGCCGCCG AGGCGGTGTG GAAGGGCACC CACCAGCACG CGGTGTCGCT GGCCGGGGGC
CTGCACCACG CGATGCGCGG TTCGGCCAGC GGGTTCTGCG TCTACAACGA TCCGGCCGTC
GCGATCGCCT GGCTGCTGTC CGCCGGCGCG AGCCGGGTCG CCTACGTCGA CATCGACGTG
CACCACGGCG ACGGCGTCCA GGCGGCCTTC TACGACGATC CGCGGGTGCT CACGATCTCG
CTGCACCAGA GCGGGCGGTC GCTGTTCCCC GGCACCGGTT TCGCCCGGGA GGTCGGCACG
GGTGACGCCG AGGGCACGGC GGTGAACGTT GCGCTGCCGC CCGGGACGGG CGACGCCGGT
TGGCTGCGCG CGTTCTCCGG GGTGGTCCCG GTGATGCTGC GCGCGTTCCG CCCGCAGGTC
CTGGTCACCC AGCACGGGTG CGACACGCAC GCGCTCGACC CGCTGGCCGA CCTGCGGCTC
TCCCTCGACG GCCAGCGCGC CTCCTACGAG GCGCTGCACC AGCTGGCCCA CGAGGTGTGC
GGCGGGCGCT GGCTCGCCTG CGGGGGCGGT GGCTACGCCC TGGACGCCGT CGTGCCGCGG
GCCTGGACGC AGCTCGTCGC GATCGCCGCC CACACCCCGC TGGACGCGGC CCGGGCGCTG
CCCGAGGAGT GGGCCGCCGC GGCCCCGGCC CGGGTCCGCG CGGCGACGGG CCACGACTCG
GTCGGCGCCG CCGGGATGCC GTCGACCTTC GGCGACGGCG CCCCGGCCGC CTACCACCCG
TGGGACGCCG GCGAGGGCGA CCCCGACGAC CCGCTGGACC GCTCGGTCGC GCAGACCCGC
AGCGCGGTGC TCCCGCTGCA CGGGCTCGAC CCGCTAGTGG ACCGGTGA
 
Protein sequence
MRDVARSYRR RVSTSANTEP SPAAPGAGAQ ALLIWDRAML DYDFGPTHPL HPVRLALTMD 
LAGAVGLLDA PGITVASAGM AGDDLIELVH DPAYLSAVRA ASPGSRAGSL LAGRFGLGTA
DNPVFDRMHA AAALVTGGTL AAAEAVWKGT HQHAVSLAGG LHHAMRGSAS GFCVYNDPAV
AIAWLLSAGA SRVAYVDIDV HHGDGVQAAF YDDPRVLTIS LHQSGRSLFP GTGFAREVGT
GDAEGTAVNV ALPPGTGDAG WLRAFSGVVP VMLRAFRPQV LVTQHGCDTH ALDPLADLRL
SLDGQRASYE ALHQLAHEVC GGRWLACGGG GYALDAVVPR AWTQLVAIAA HTPLDAARAL
PEEWAAAAPA RVRAATGHDS VGAAGMPSTF GDGAPAAYHP WDAGEGDPDD PLDRSVAQTR
SAVLPLHGLD PLVDR