Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_1239 |
Symbol | |
ID | 5669652 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | + |
Start bp | 1487359 |
End bp | 1488666 |
Gene Length | 1308 bp |
Protein Length | 435 aa |
Translation table | 11 |
GC content | 76% |
IMG OID | 641240171 |
Product | histone deacetylase superfamily protein |
Protein accession | YP_001505599 |
Protein GI | 158313091 |
COG category | [B] Chromatin structure and dynamics [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.127152 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00245204 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGCGGGACG TCGCGCGGAG CTACCGTCGT CGTGTGAGCA CGTCCGCGAA CACCGAGCCC TCGCCGGCCG CGCCCGGAGC GGGTGCGCAG GCCCTCCTCA TCTGGGACAG GGCGATGCTC GACTACGACT TCGGCCCGAC CCATCCGCTG CACCCGGTGC GGCTCGCGCT GACGATGGAT CTCGCCGGCG CCGTCGGCCT GCTCGACGCC CCGGGGATCA CCGTCGCCTC TGCGGGGATG GCCGGCGACG ACCTGATCGA GCTCGTCCAC GACCCCGCCT ACCTCAGTGC GGTGCGCGCG GCGTCGCCGG GGTCGCGGGC CGGGTCGCTG CTGGCGGGCC GCTTCGGGCT GGGCACCGCC GACAACCCGG TCTTCGACCG GATGCACGCC GCCGCCGCGC TGGTGACCGG CGGGACGCTC GCCGCCGCCG AGGCGGTGTG GAAGGGCACC CACCAGCACG CGGTGTCGCT GGCCGGGGGC CTGCACCACG CGATGCGCGG TTCGGCCAGC GGGTTCTGCG TCTACAACGA TCCGGCCGTC GCGATCGCCT GGCTGCTGTC CGCCGGCGCG AGCCGGGTCG CCTACGTCGA CATCGACGTG CACCACGGCG ACGGCGTCCA GGCGGCCTTC TACGACGATC CGCGGGTGCT CACGATCTCG CTGCACCAGA GCGGGCGGTC GCTGTTCCCC GGCACCGGTT TCGCCCGGGA GGTCGGCACG GGTGACGCCG AGGGCACGGC GGTGAACGTT GCGCTGCCGC CCGGGACGGG CGACGCCGGT TGGCTGCGCG CGTTCTCCGG GGTGGTCCCG GTGATGCTGC GCGCGTTCCG CCCGCAGGTC CTGGTCACCC AGCACGGGTG CGACACGCAC GCGCTCGACC CGCTGGCCGA CCTGCGGCTC TCCCTCGACG GCCAGCGCGC CTCCTACGAG GCGCTGCACC AGCTGGCCCA CGAGGTGTGC GGCGGGCGCT GGCTCGCCTG CGGGGGCGGT GGCTACGCCC TGGACGCCGT CGTGCCGCGG GCCTGGACGC AGCTCGTCGC GATCGCCGCC CACACCCCGC TGGACGCGGC CCGGGCGCTG CCCGAGGAGT GGGCCGCCGC GGCCCCGGCC CGGGTCCGCG CGGCGACGGG CCACGACTCG GTCGGCGCCG CCGGGATGCC GTCGACCTTC GGCGACGGCG CCCCGGCCGC CTACCACCCG TGGGACGCCG GCGAGGGCGA CCCCGACGAC CCGCTGGACC GCTCGGTCGC GCAGACCCGC AGCGCGGTGC TCCCGCTGCA CGGGCTCGAC CCGCTAGTGG ACCGGTGA
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Protein sequence | MRDVARSYRR RVSTSANTEP SPAAPGAGAQ ALLIWDRAML DYDFGPTHPL HPVRLALTMD LAGAVGLLDA PGITVASAGM AGDDLIELVH DPAYLSAVRA ASPGSRAGSL LAGRFGLGTA DNPVFDRMHA AAALVTGGTL AAAEAVWKGT HQHAVSLAGG LHHAMRGSAS GFCVYNDPAV AIAWLLSAGA SRVAYVDIDV HHGDGVQAAF YDDPRVLTIS LHQSGRSLFP GTGFAREVGT GDAEGTAVNV ALPPGTGDAG WLRAFSGVVP VMLRAFRPQV LVTQHGCDTH ALDPLADLRL SLDGQRASYE ALHQLAHEVC GGRWLACGGG GYALDAVVPR AWTQLVAIAA HTPLDAARAL PEEWAAAAPA RVRAATGHDS VGAAGMPSTF GDGAPAAYHP WDAGEGDPDD PLDRSVAQTR SAVLPLHGLD PLVDR
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