| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1236 |
|---|
| Symbol | |
|---|
| ID | 5669649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 1481138 |
|---|
| End bp | 1482574 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641240168 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001505596 |
|---|
| Protein GI | 158313088 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3408] Glycogen debranching enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0457319 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00331425 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGACGCCC GCGCGGGCGC CGCGTCGGGC GGGGCGATCT CGCCGCCGGC CGCGGAAATC
CCCCTGTCGG CGGACATCGC CACGGTGCGC GAGACGGCCG TGGCGGTGCT GCGCGCCAAC
GACCTTGGTG ACATCACCCG GCCGTCGCCG ACGCTCTACC CGCACCAGTG GCTGTGGGAC
AGCTGCTTCA TCGCCATCGG CCTGCGCCAC CTCGACCCGG CGCGTGCCGC CGCCGAGCTG
CTCTCGCTGC TGCGCGGCCA GTGGCCCGGC GGCATGATCC CGCACGTGAT CTTCGCCGAG
ACGACCGACT ACTACCACGC GGGTCCGCAG CGCTGGCGCT GCGACCGAGT CTGCACGACC
GCCGGCGGGG TCCAGTCGAC CGGCGTCACC CAGCCGCCGA TGATCGCCGA GGCGGCCGTG
CGGGTGGGCC AGGCGATGAG CAGGGAGGAC CGGGCAGACT TCTACCGGCG GCTCGCACCG
GGCCTGGTGC GCTTCCACGA GTGGCTCTAC CGCGAGCGCG ACCCCGACGA CACCGGCCTG
GTGACGCTGG TCCACTCCTG GGAATCCGGA ATGGACAACA CCCCCACCTG GATGGAGATG
ACCAAGCCGG TCGCCCCCCG GGCGGTGCGC GCGCTGCGCC GGATCAACGG CGACGACACG
CTCGACGCCC TGCGCCGCGA CTCCAAGGAG GTGCCGCCGG ACGAGCGGCT GACCTCGGCG
GACCTGTTCA CGCTCTACCG GATCGTCCGC GAGCTGCGCC GCAGCCGGTA CGACTTCCGG
ACGATCCGCT CCACCTTCGT CCCGCTCGTG CAGGACGTGG CCTTCAACGC GATCCTGGCC
CGGGCCAACG AGCATCTCGA GACGATCGCG GCCGAGGCCG GGGTGCGCAT CCCGCGCTGG
CTGTCCCGTT CGATGCGCCG GACCCGCGTG GCCCTCAACG AGCTGTGCTC GGACGGTGTC
TACTACAGCC GGAACTTCCG CACCGGCGAG CTGCTGCGCC ACCACACCAT CGCCGGCTTC
CTGCCGCTGT ACGCGGGCGT GGTGCCGGAG TCCCAGGTGG ACGACATGGT GGACACGCTC
ATGTCACCGC GGTACTGGGC CCAGTACGGC ATCGCCAGCG TGCCGACCGA CGACCCCGCC
TTCCTGCCTC GCTGCTACTG GCAGGGCCCG GTATGGGTCA ACATGAACTG GCTGATCGCG
GACGGCCTGG ACCGCTACGG CCGGACCGAG GCCGCCGCCG CGATCCGCCG CAACACCCTC
GACGTGATCG TGTCGTCGGG ATCGATGTAC GAGTACTACT CACCGCTCGA CGGCTCCGGC
GCCGGCAGCA ACCGCTTCTC CTGGACGGCC GCCCTGCTGG TGGACATGCT CGACAACGGC
GCCCGCCCGA CCTCCCGGGC CCAGGCGGCC ATCCCCACCA CCCGCACCCC CGCCTGA
|
|---|
| Protein sequence | MDARAGAASG GAISPPAAEI PLSADIATVR ETAVAVLRAN DLGDITRPSP TLYPHQWLWD
SCFIAIGLRH LDPARAAAEL LSLLRGQWPG GMIPHVIFAE TTDYYHAGPQ RWRCDRVCTT
AGGVQSTGVT QPPMIAEAAV RVGQAMSRED RADFYRRLAP GLVRFHEWLY RERDPDDTGL
VTLVHSWESG MDNTPTWMEM TKPVAPRAVR ALRRINGDDT LDALRRDSKE VPPDERLTSA
DLFTLYRIVR ELRRSRYDFR TIRSTFVPLV QDVAFNAILA RANEHLETIA AEAGVRIPRW
LSRSMRRTRV ALNELCSDGV YYSRNFRTGE LLRHHTIAGF LPLYAGVVPE SQVDDMVDTL
MSPRYWAQYG IASVPTDDPA FLPRCYWQGP VWVNMNWLIA DGLDRYGRTE AAAAIRRNTL
DVIVSSGSMY EYYSPLDGSG AGSNRFSWTA ALLVDMLDNG ARPTSRAQAA IPTTRTPA
|
|---|
| |