| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1230 |
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| Symbol | dapF |
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| ID | 5669643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 1471573 |
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| End bp | 1472496 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 641240162 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001505590 |
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| Protein GI | 158313082 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.017842 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAGCTCGC CGCGGCCGTA CGATCGCGGC GTGCGCTTCG TCAAGGGACA CGGAACGGGT
AACGACTTCC TCATCCTGCC GGATGCTGAC GGCGAGCTCG ATCTCAGCCC CGAGCTGGTG
CGGGCGCTGT GCCACCGAGG CACCGGCATT GGCGCCGACG GGGTGCTGCG GGTCGTGTTG
ACCGCGGCCG AGCCCGCCGC CGGCGACAGC GCGGCCGCCC GCTGGTTCAT GGACTATCGC
AACGCCGACG GGTCGATCGC CGAGATGTGC GGCAACGGGA TCCGGGTGTT CGCCCGCTAT
CTCGTCGACG CGGGTTACGC CGCGCCCGGC CGTCTCGTCA TCGCCACCCG GGCCGGCCTG
CGGGCGGTCG AGGTGCCTGC GGGCGGCGAC GTCACCGTCG AGATGGGACC GCCCGAGCTG
GCCGCCGGCC CGGTGCCGGT CACGGTCGCC GGGCGGGAGT TCGCCGCCGT GCCGGTCTCG
ATGGGGAACC CGCACGCGGT CTGCTTCGCC GACGACCTCG ACCCGGCCGG CCTGGCGCGC
CTGGACCTGC GCGCGCCGGC CTACCCGGCC GCCGCCTTCC CCGAGGGCGT GAATGTCGAG
GTCGTCGTCC CGGCTCCGGA CGGGGTCGCC ATGCGGGTCT TCGAGCGGGG CGTCGGTGAG
ACCGCGTCCT GCGGCACCGG CGCGTGTGCC GTCGCTGTGG CCTGGGCGGC CCGCAATGGC
GATGGGCCGC CCGCAGAGGT CGAGGTCGAC CTCCCCGGCG GGCGGCTGAC TGTCGGCTGG
CGGGAGTCGA CCGTCCTGCT CAGTGGCCCG GCCGTGCTGG TGTCGGACGG TGTCCTTCGT
CCCGACTGGC TGCGCGCGGC GGGTGGCTTC GGCCCGGCGG CTCCCGCGGG CGAGCGGCGT
CCGAGCGCTG TCGGGGCCGG CTGA
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| Protein sequence | MSSPRPYDRG VRFVKGHGTG NDFLILPDAD GELDLSPELV RALCHRGTGI GADGVLRVVL
TAAEPAAGDS AAARWFMDYR NADGSIAEMC GNGIRVFARY LVDAGYAAPG RLVIATRAGL
RAVEVPAGGD VTVEMGPPEL AAGPVPVTVA GREFAAVPVS MGNPHAVCFA DDLDPAGLAR
LDLRAPAYPA AAFPEGVNVE VVVPAPDGVA MRVFERGVGE TASCGTGACA VAVAWAARNG
DGPPAEVEVD LPGGRLTVGW RESTVLLSGP AVLVSDGVLR PDWLRAAGGF GPAAPAGERR
PSAVGAG
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