| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1205 |
|---|
| Symbol | |
|---|
| ID | 5669618 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 1440503 |
|---|
| End bp | 1442290 |
|---|
| Gene Length | 1788 bp |
|---|
| Protein Length | 595 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641240137 |
|---|
| Product | RNA modification protein |
|---|
| Protein accession | YP_001505565 |
|---|
| Protein GI | 158313057 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00267373 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.652733 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCTCCTC GTCCTGCACG CCGGGTAGCT CTCGTCACGC TCGGGTGTTC CCGTAACGAG
GTGGATTCCG AGGAGCTTGC CGCCCGCCTC GCCGCCGACG GCTGGGACCT GGTCGACGAC
GCCGCCGACG CGGACGCCGT CCTGGTCAAC ACCTGCGGTT TCGTCGAGGC GGCGAAGAAG
GACTCGATCG ACGCCCTGCT CGCCGCCGAC GCACTGCGCG GGCCCGGCGG CAACGGGCCC
GGTGACGGTG AGTCCGGCGA TGACGGGCCG GGCGGCGGCG CGACCACCGG GCGGGCGACC
GCGTCGGGCG GGCCGCGCGC GGTCGTGGCC GTGGGCTGCA TGGCCGAGCG GTACGGCCGG
GAGCTCGCCG ACACGCTGCC CGAGGCGGAC GCCGTCCTCG GCTTCGACGC ATATCCGCGG
ATCTCGGCGC ACCTCGACGC GGCGCTCGCC GGCTCGGCGC CGGCCTCGCA CACCCCGCGT
GACCGGCGCA CGCTGCTGCC GATCTCTCCG GTGGAGCGGG GCGACGCCTC CCGCGCGGCG
CACTCGCCGC ACATCCCTGG TCACATCCAG CTCCCCGGTG GTGGACGTGT CCTTCCGTCG
CCGGACGGCC GACCGGCGGC GAACAGCCGC CCGGCAACGG ATCTGGCGGA CCTGGCCGGC
CTGGCGGAGC CGGCGGGGGA GGGCGCGGCC GGTACCGGCC GGCGGCGGCT CACCTCCAGC
CCGGTCGTGC CGCTGAAGCT GTCGAGCGGT TGCGACCGCC GTTGCGCCTT TTGCGCCATC
CCGTCCTTCC GTGGCTCGCA CGTGTCCCGC CGGCCGGAGG AGGTACTGGC CGAGGCCGAG
TGGCTGGCTG GGCAGGGCGC CCGCGAGCTT GTCCTGGTCA GCGAGAACTC GACGTCCTAC
GGCAAGGATC TCGGCGATCT GCGGGCGCTC GAGAAGCTGC TGCCCCTGCT GGCCGCCGTT
CCGGGGATTG TCCGTGTCCG CACTGTGTAT CTCCAGCCGG CCGAGCTGCG GCCGTCCCTG
CTCGAGGTGC TGCTGACGAC GCCGGGCCTG GCGCCCTACC TTGACCTGTC GTTCCAGCAC
GCCAGCCCGG CGGTGCTGCG GCGGATGCGC CGGTTCGGCG GCTCGACCGA CTTCCTGGAC
CTGCTGCGGC GGGCCCGCGC GCTGCTCCCC GACCTGGGCG CCCGCTCGAA CGTGATCGTC
GGCTTCCCCG GTGAGACCGA CGAGGACGTC GACATCCTGG TGAATTTTCT CGAGCGCGCC
GACCTCGACG CTGTCGGGGT GTTCGGCTAC TCCGACGAGG AGGGGACGGA GGCCGCCGGG
ATGGCGGGCC ACGTCGACCC CGAGGAGATC GAGAGCCGGC GGGCCGAGGT CACCGACCTC
GTCGAGCAGC TCACCGCAGC CCGCGCCGAG CGCCGCATCG GCACGACCGT CGAGGTGCTC
GTCGAGGAGG TGGCCGGCGG TCTCGGGTAC GGCTGCGCCG GGCACCAGCA GGCCGACGCC
GACGGCTCCT GCACGGTCCG CCTGCCCGCG GGCGGGCCAC CGGGCGGGGT GTCCGTCGGG
GACCTCGTCG AGGCCCGGGT CGTGGCGGCC GAGGGCGTCG ACCTGATCGC GGAGTTCACC
GGCGTGCTCG ACCGTGCCGG CGCCGGGCTG GCCAGCGCTG GGTCAGCCGG TGCCGGGTCG
GTCGGTGCCG GGTCGGTCGG TTCGGCCGGG GCGGGTTCCG TGCTGCCGCC GATCCCGGAC
GGGGTCGGCC CGATGGACGC GGTGGGCCAC CCTTCGGGCG TGGCGTGA
|
|---|
| Protein sequence | MSPRPARRVA LVTLGCSRNE VDSEELAARL AADGWDLVDD AADADAVLVN TCGFVEAAKK
DSIDALLAAD ALRGPGGNGP GDGESGDDGP GGGATTGRAT ASGGPRAVVA VGCMAERYGR
ELADTLPEAD AVLGFDAYPR ISAHLDAALA GSAPASHTPR DRRTLLPISP VERGDASRAA
HSPHIPGHIQ LPGGGRVLPS PDGRPAANSR PATDLADLAG LAEPAGEGAA GTGRRRLTSS
PVVPLKLSSG CDRRCAFCAI PSFRGSHVSR RPEEVLAEAE WLAGQGAREL VLVSENSTSY
GKDLGDLRAL EKLLPLLAAV PGIVRVRTVY LQPAELRPSL LEVLLTTPGL APYLDLSFQH
ASPAVLRRMR RFGGSTDFLD LLRRARALLP DLGARSNVIV GFPGETDEDV DILVNFLERA
DLDAVGVFGY SDEEGTEAAG MAGHVDPEEI ESRRAEVTDL VEQLTAARAE RRIGTTVEVL
VEEVAGGLGY GCAGHQQADA DGSCTVRLPA GGPPGGVSVG DLVEARVVAA EGVDLIAEFT
GVLDRAGAGL ASAGSAGAGS VGAGSVGSAG AGSVLPPIPD GVGPMDAVGH PSGVA
|
|---|
| |