| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1150 |
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| Symbol | rimM |
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| ID | 5669563 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 1372292 |
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| End bp | 1372969 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 641240082 |
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| Product | 16S rRNA-processing protein RimM |
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| Protein accession | YP_001505510 |
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| Protein GI | 158313002 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
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| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0280728 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCAGGC GGCCGCGTCC CATGGGTGAG CCTGTCGTCG TCGGGCGGGT CGGCCGTCCG
CACGGCATCC GTGGCGACGT GACCGTCGAC GTCCGCACCG ACCTGCCGGA GCGCCGTTTC
GCGCCGGGGG CCCGCCTGGT TCGCCAGGTG GCCGATGGGC CGGCCTCGCG GCCGGCCGCG
GACGCCGCAG GTGCGGCTGA TGCCGTCGGC ACGGCGGCTG GTCCTGGCTC GGCGGGCGAT
TCCGGCGCCG CCCGGGCCGC CGGGCCGCCG GTCGCGACGG TGCTGTCCGT TGTGGCGTCC
CGGTGGCATT CCGGCCGTCT GCTGGTCCGC TTCGACGGGG TCACGGACCG TGACGCCGCC
GAGGCGCTGC GGGGCAGCTT CCTCACCATC GACTCCGACG AGTGCGGCCC GGCGGTCGAC
CCCGATGACG AGGACGACGA CGGCGAGCTG TGGTGGGATC GCGACCTGGT CGGCCTGCAC
GCGCGCACGC CCGCCGGGGA CGTCCTCGGT GAGGTCGTCG ACGTCATCCA TTCCCCGGGC
GGGGAGATCC TCGCGATCGG CCGTCCCGAG GGCGGGGAGT ACCTGGTGCC GTTCGTCCGG
GAGATCGTGC CCACCGTCGA CCCGGCGGCG GGGCACATCG TGGTGGACCC GCCTCCCGGC
CTGCTCGACC TCGACTGA
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| Protein sequence | MGRRPRPMGE PVVVGRVGRP HGIRGDVTVD VRTDLPERRF APGARLVRQV ADGPASRPAA
DAAGAADAVG TAAGPGSAGD SGAARAAGPP VATVLSVVAS RWHSGRLLVR FDGVTDRDAA
EALRGSFLTI DSDECGPAVD PDDEDDDGEL WWDRDLVGLH ARTPAGDVLG EVVDVIHSPG
GEILAIGRPE GGEYLVPFVR EIVPTVDPAA GHIVVDPPPG LLDLD
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