| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1052 |
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| Symbol | |
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| ID | 5669466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 1235451 |
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| End bp | 1237469 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641239981 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001505414 |
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| Protein GI | 158312906 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.776114 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGATCG GACGTTCAGT AGGCCGGGTT GTCATCACTG ACGCGCGCCC GGTCGTCTCC
TGTGGCCAGT GGCCGTCGCG GGCGGTGGAG GGGGAAACCC TCACCGTCAG CGCGACGGTC
TTCCGTGAGG GGCATGACCT CATCGGGGCC AATGTCGTTC TTTCCGGCCC CGACGGCCAG
GGAGTTCCGT TTACGCGGAT GAAACTCGCC GGCGCGGGCA CGGACCGCTA CGAGGCCGAT
GTCGTCATGG GCCGTGAGGG CCTGTGGGGC TATCGCGTGG AGGCCTGGGC TGATCCGCTG
GCCACCTGGC GGCACGGCAT CGAGCTCAAG GTCGGTGCCG GCCAGACGGT GGACGAGCTG
GCGGTCGACT TCGAGGACGG CGCGCGGCTG CTGCTGCGCG CGCTGCCCGG AGTGCCCGAG
CCCCGCCGGG TCGACATCGC GCGGGCCGTC GCGGTCCTGC GCGACGACGA CGTGACGGAT
CCGCACGAGC GCATCGCCGT CGCCTGCTCC CCGGAGCTGG CCGGCCTGCT CGACGAGCAC
CCGCTGCGCG AGCTCGTGAC CCGCACCCCG TTGTACCGGG TGTGGGTGGA CCGCGAGCGG
GCGCTCTACG GCAGCTGGTA CGAGCTGTTC CCCCGGTCCG AGGGCGCGAG CCTCGACCCA
CCGCGATCGG GCACCTTCCT CACCGCCGCG GAACGACTGC CGGCCGTCGC CGCGATGGGC
TTCGACGTGG TCTATCTGCC ACCGATCCAC CCGATCGGCG AGATCAACCG CAAGGGCCCG
AACAACACCC TCACGCCCGG CCCGGAGGAC CCCGGTTCAC CGTGGGCCAT CGGCAGCTCG
CAGGGCGGCC ACGACGCCGT CCACCCGGAT CTGGGGACCC TGGACGACTT CGACCTCTTC
GTCGCGCGGG CCCGCTCGCT CGGCATGGAG GTCGCGCTCG ACCTGGCGTT GCAGTGCGCG
CCGGACCACC CCTGGGCGAA GCACCATCCG GAGTGGTTCG TCGTGCGCAG CGACGGCTCG
ATCGCGTACG CGGAGAATCC GCCGAAGAAG TACCAGGACA TCTATCCCCT GAACTTCGAC
GCCGACCCGA TCGGTCTATA TCACGAGATT CTGCGGGTGG TCCGGTTCTG GACGGCCCGC
GGCGTCCGGA TCTTCCGGGT GGACAATCCG CACACGAAGC CGGTCGAGTT CTGGGAGTGG
CTCATCGGCC AGGTCAAGGC GACCGAGCCG GACGTGCTGT TCCTGGCCGA GGCGTTCACC
CGCCCGGCGA TGATGCACAC GCTCGCCAAG ATTGGCTTCA CCCAGTCCTA CACCTACTTC
ACCTGGCGCA ACGAGCGCCG TGAGCTGGAG GAGTACGCGC AGGAGCTGGT CGACGCGGCG
CACTACATGC GGCCCAACTT CTTCGTCAAC ACCCCGGACA TCCTGCCCGG GTTCCTGCAG
ACGGGCGGGC CGGCGGCGTT CCGCATCCGG GCGGTGCTCG CCTCGATGCT CTCCCCGACC
TGGGGAGTGT ACGCGGGGTA CGAGCTGTAC GAGAACTCCC CCGTGCGGGC CGGGAGCGAG
GAGTACCTCG ACTCGGAGAA ATACCAGTAC AAGCCGCGGG ACTGGGCCGG CGCGGAACGC
GCCGGGGCCT CGCTGGCGCC CTACCTCACC CGGCTCAACC AGATCCGGCG CGACCACCCG
GCCCTGCACT GGATGCGCAA CCTGCACATC CACGAGTCCG CGACGCCCGA GATCACAGTC
TTCTCCAAAC GGCACACCAC GGCCCGGGCG GGCGGACCCG CCCTCGGCCG CCTCCGCCCC
GACGACGACC TCGTCATCGT CGTCGTCAAC CTTGACCCGC ATTCGGCCCG GGAGACCACC
GTGCGACTGG ACATGCCCGC TCTCGGGCTT GACTGGGGCG ACCGCTTCGA AGTGCACGAC
GAGATGACCG GCGTCACCTA CCAGTGGGGC CGTGAGAACT ACGTCCGCCT GGAGCCGACC
GAGCCCGCCC ACATCCTGAC CGCGCGGCGC CTGCCGTGA
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| Protein sequence | MMIGRSVGRV VITDARPVVS CGQWPSRAVE GETLTVSATV FREGHDLIGA NVVLSGPDGQ
GVPFTRMKLA GAGTDRYEAD VVMGREGLWG YRVEAWADPL ATWRHGIELK VGAGQTVDEL
AVDFEDGARL LLRALPGVPE PRRVDIARAV AVLRDDDVTD PHERIAVACS PELAGLLDEH
PLRELVTRTP LYRVWVDRER ALYGSWYELF PRSEGASLDP PRSGTFLTAA ERLPAVAAMG
FDVVYLPPIH PIGEINRKGP NNTLTPGPED PGSPWAIGSS QGGHDAVHPD LGTLDDFDLF
VARARSLGME VALDLALQCA PDHPWAKHHP EWFVVRSDGS IAYAENPPKK YQDIYPLNFD
ADPIGLYHEI LRVVRFWTAR GVRIFRVDNP HTKPVEFWEW LIGQVKATEP DVLFLAEAFT
RPAMMHTLAK IGFTQSYTYF TWRNERRELE EYAQELVDAA HYMRPNFFVN TPDILPGFLQ
TGGPAAFRIR AVLASMLSPT WGVYAGYELY ENSPVRAGSE EYLDSEKYQY KPRDWAGAER
AGASLAPYLT RLNQIRRDHP ALHWMRNLHI HESATPEITV FSKRHTTARA GGPALGRLRP
DDDLVIVVVN LDPHSARETT VRLDMPALGL DWGDRFEVHD EMTGVTYQWG RENYVRLEPT
EPAHILTARR LP
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