| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0979 |
|---|
| Symbol | |
|---|
| ID | 5669393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 1142619 |
|---|
| End bp | 1143242 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641239907 |
|---|
| Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| Protein accession | YP_001505341 |
|---|
| Protein GI | 158312833 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
|---|
| TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.388014 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAGGTAA CCGAGCTGCC GATCGCCGAT GCCTGGTTGT TCACCCCTCG CCAGCACTCC
GACCCGCGCG GAACATTCCT CGAATGGTTC CGCGTCGACG CGCTGGAATC GGTGACCGGG
CACCGGCTTG AACTCGCCCA GGCGAACGCC AGCGTCAGCC GGGCGGGAAC GCTGCGCGGC
GTGCACTACG CCCAGGTGCC GCCCAGCCAG GCAAAGTACG TCACCTGTGT CAGCGGCCGT
GTGCTGGACT GTGTCGTCGA CATCCGGGTC GGTTCGCCGA CCTTCGGGTC GCACGCGGCC
GTCCTGCTCG ACGACGTCGA CCGGCGGGGC CTCTATGTGT CCGAGGGGCT CGGGCATGCC
TTCATGGCGT TGACGGACGG CGCCGCGATC ACCTATCTGT GTTCCACGCC GTACACGCCG
GAGCGCGAGT TCGGGATCAA CCCGCTCGAT CCCGACCTGG CCCTGCCGTG GCCGGCCGAG
CTGACCCCGC TGCTGTCGGA GAAGGACACC GCCGCGCCGA CACTGAGCCA GGCCGCGGCG
GCGGGCCTGC TCCCCACCTA CGCCGACTGC CGGGCGTTCT ACGACTCGCT GCGGCCGCTG
AGCACCGGCG CGAGCCGCGG CTGA
|
|---|
| Protein sequence | MEVTELPIAD AWLFTPRQHS DPRGTFLEWF RVDALESVTG HRLELAQANA SVSRAGTLRG
VHYAQVPPSQ AKYVTCVSGR VLDCVVDIRV GSPTFGSHAA VLLDDVDRRG LYVSEGLGHA
FMALTDGAAI TYLCSTPYTP EREFGINPLD PDLALPWPAE LTPLLSEKDT AAPTLSQAAA
AGLLPTYADC RAFYDSLRPL STGASRG
|
|---|
| |