Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_0927 |
Symbol | |
ID | 5669341 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 1082842 |
End bp | 1083489 |
Gene Length | 648 bp |
Protein Length | 215 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641239854 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001505289 |
Protein GI | 158312781 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.468026 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.980038 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCCCAGC ACAAGACGCC GGCCGGGCTC CCGTCGCCCG GCTCCGTCCG GCCGGGCGGA GGCGAACCGG CGCCGCGCCG GCGCGCCGAC GCGCGACGCA ACGTCGACGC GTTGATCGAG GCCGCGAGGA CGGTCTTCGC CACCTCCGGC GTGGACGCAC CGGCGAAGGA GATCACCGAC CTGGCCGGCG TAGGAGTCGG CACGCTGTAT CGGCATTTCC CACAGCGCTC CGACCTGGTC AAAGCCGTGG TGGAAAACGG AATCGACGCC GTCGCCGACG CGGGCCCGGC CCTGAGCGCC GAGCACGGAC CGGCGGAAGC GCTCACCAGA TGGATCAACC GGTTCGCCGA ACTGCTCGCG ACCAAACGCG GGCTCGCCTC AGCGCTGCAC TCGGGCGATC CGGCATTCCA GGGGCTGCCC GGCTACTTCC GGCAACGGCT CGGCCCCGCC CTCGCGGCGC TGCTCGCCGC CGCGGTGGCC GACGGCGCGG TTCGCGACGA CATCAGCGCC GAGGATCTCC TGCACGCCGT CACCGCGCTG TGCCAGCCCG TACCCGGGCG AGGGCCCGAA CACAACCAGC GCATCGTCGC CATCCTTCTC GACGGCCTAC GCCGCGGCAC CGCGCAGCGG CCCCCCGGCA ACCCCTGA
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Protein sequence | MSQHKTPAGL PSPGSVRPGG GEPAPRRRAD ARRNVDALIE AARTVFATSG VDAPAKEITD LAGVGVGTLY RHFPQRSDLV KAVVENGIDA VADAGPALSA EHGPAEALTR WINRFAELLA TKRGLASALH SGDPAFQGLP GYFRQRLGPA LAALLAAAVA DGAVRDDISA EDLLHAVTAL CQPVPGRGPE HNQRIVAILL DGLRRGTAQR PPGNP
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