| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0790 |
|---|
| Symbol | |
|---|
| ID | 5669206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 917486 |
|---|
| End bp | 918769 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641239718 |
|---|
| Product | C-methyltransferase |
|---|
| Protein accession | YP_001505154 |
|---|
| Protein GI | 158312646 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00493713 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.231188 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCCG GAACCTCAGC AGAAGGAAGC CCGGCCGCGG GAGGCGTCGC CGCCCCGGTC
ACCGCCTGCC GATCGTGTGA CGGGCCCGCC CCGCGTGTCT TCCTGTCGCT GGGTGACACC
CCTGTCGCGA ACCGGCTCGT GAAGGCGGAC GCCCTCGACG CCGTGGACCC GGCCTTCCCG
CTGGAGGTCG GCTTCTGCGA GCAGTGCGCG CTCGTCCAGC TGACTCACGT GCTCCCCGCC
GACGAGATCT TCGACGCCGA CTACCCGTAC TTCTCGTCGT TCTCCGACAT GCTCGTCCGG
CACTCCGAGA AGCACGTGAT CGACCTGATC GCGAGCCGCG ACCTCGGCCC GGAGAGCCTG
GTCGTCGAGG TCGCCAGCAA CGACGGGTAC CTGCTCAAGG CGTTCGTCGA GCGCGGCATA
CCGGTGCTGG GCATCGAGCC GACCCCCGGC CCGGCCGCCG CCGCGCGCAA GGCGGGCGTG
CCCACCCGCG AGGAGTTCTT CGGGGCCGAC CTCGCCCGCA CGCTCGTCGC CGAGGGCCTG
CGGGCGGACG TCATCATCGC CAACAACGTG ATGGCGCACG TCCCCGACCT CAACAGCTTC
GTCGAGGGCT TCTCGATCCT GCTCGCCGAC GACGGGATCG TCGACGTCGA GAACCCCGGG
GTCGGCGCGC TGCTGGCGCA CAACGAGTTC GACACCGTCT ACCACGAGCA CTTCTGCTAC
TTCTCCACGA TCGCGGTGGA CGCCCTCATG CGCCGCCACG ACCTGCAGCT CGTCGGCGTC
GAGGAGTTCG CGGACCTGCA CGGCGGGACG CTGCGCTGGC GGATGCAGCA CCAGGGCGCC
GCCGAGCCGA CCGGGTCGGT GAAGGCCGTC CTGGACGCGG AGCGCACCGC CGGCCTCGGG
ACGTTCGAGC GCTACGGCAG CTTCGGTGAC GACGTCCGCG TGCTGCAGGG CGAGCTGACC
GAGCTGCTGC GCTCGCTGAA GGCCGAGGGG AAGTCCATCG CGGCCTACGG CGCGGCGGCC
AAGGGCGCCA CCCTGCTGAA CTCGACCGGC ATCGACCACA CGCTGATCGA CTTCGTCGTC
GACCGGAACG TGCACAAGCA GGGCAAGTAC ATCCCGGGCG CGCGGATCCC GATCCTCGAC
CCGGCCGTGC TGCTTGAGCG CCAGCCCGAC TACCTGCTGC TGCTCGCGTG GAACGTGAAG
AAGGAGATCA TGGCCCAGCA GGAGGAGTAC GCCTCTCGGG GCGGCCGCTT CGTCGTGCCC
GTGCCCCGTC CGGTCGTGCT CTAG
|
|---|
| Protein sequence | MSSGTSAEGS PAAGGVAAPV TACRSCDGPA PRVFLSLGDT PVANRLVKAD ALDAVDPAFP
LEVGFCEQCA LVQLTHVLPA DEIFDADYPY FSSFSDMLVR HSEKHVIDLI ASRDLGPESL
VVEVASNDGY LLKAFVERGI PVLGIEPTPG PAAAARKAGV PTREEFFGAD LARTLVAEGL
RADVIIANNV MAHVPDLNSF VEGFSILLAD DGIVDVENPG VGALLAHNEF DTVYHEHFCY
FSTIAVDALM RRHDLQLVGV EEFADLHGGT LRWRMQHQGA AEPTGSVKAV LDAERTAGLG
TFERYGSFGD DVRVLQGELT ELLRSLKAEG KSIAAYGAAA KGATLLNSTG IDHTLIDFVV
DRNVHKQGKY IPGARIPILD PAVLLERQPD YLLLLAWNVK KEIMAQQEEY ASRGGRFVVP
VPRPVVL
|
|---|
| |