| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0731 |
|---|
| Symbol | |
|---|
| ID | 5669147 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 849344 |
|---|
| End bp | 851635 |
|---|
| Gene Length | 2292 bp |
|---|
| Protein Length | 763 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641239658 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_001505095 |
|---|
| Protein GI | 158312587 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.164946 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.060075 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAAGA GCAGGGGCAA GCCGAGAGCG AGGTCCGCGG GATCCGGGGG TGCAGGGGCG
CCCGCGCGCA GGGGGACCGG CCCGGCAACG CCGGCCGCGG CGAGCGAGGC GGCGACATCC
GAAGCCATAC CCGAAGCCAC GGCGGATGCC GCCGGAGGCG CTGGCGACCT CGGACCCACC
GGCGGCAACG GCGCCGAGGC TGACGTTGCT GCTGAGGCTG CTGACGTTGC GGCTGGTGAG
GTTGCCGCTG ACGAGATTGC AGGCGGCGAG GCTGCTGACG GCGAGGCTGG CGATGCGGCG
GCTGCGGGCG CCGGGGTGGC GCACGAAGAG GCTGACCGCG AAGAGGCTGA CGTGGTGGCC
CCGGCCGGCG AGGTGTCTGC CGAAGAGGCT GGGGTGGCGG CCGGGACGGT GGCTACCGGC
GAGGCGGTGG CCGAGAAGGC CGAAGCGGTG GCCGCTGGCG CGGGCGTGGC CGAGGAGATG
GCTGAGCGGC AGAGCCTGCC AGCCGAGACC AAGCCCGAGG TCGTGGTCGT GCCCGAGGGT
GAGGCCAAGC CCGAGGTTGC AGCTGAGCCC GAGGTTGAGG CCAAGGTCGG ATCCGAAACC
GAGGTCGGAT CCGGCGTCGA GGCGCAGGCC GCGGTCGCGG ATGAGAACGC GCTGGTCTCG
GCGGAGCCGG AGGCCGGTGC GGAGCCGGTC GAGATCGTCA TTCCTGAGCA GGTGACCGCT
GCCGCGAGCA TGGTCGCGCC GGCCGGAGCC GCGGAGAAGG AGACGGTCGC GCCGGGCCAG
GTCGCCGCGG AGAAGACCGA GGAGAAGACG GCCGCCCCGG CCGGCCGGGG TCGGCGGGTG
CCGGCCTGGG CGGTGCTGGC CGTGTGCTGC TTCGCCCAGT TCATGGTCGT CCTGGACGTC
TCGATCGTGA ACGTCGCGCT GCCGTCCATG CAGACCGAAC TGGGTCTGAG CTCGTCCGGT
CTGCAGTGGG TGGTCAACTC CTACACGCTG GCCTTCGCCG GGCTGCTGCT GTTCGGTGGG
CGGGCGGCGG ACCTGTTCGG GCGGCGCCGG GTGTTCATCA CCGGGCTCAC CCTGTTCACC
GCGGCGAGTC TTGCCGGCGG GCTCGCCAAC GACCAGACGA TGCTGATCGT CGCCCGCGCC
GTGCAGGGGC TCGGTGGCGC GGTGCTCGCG CCCGCGACGC TGAGCATGCT GATGACCTCC
TTCCCGGATC CGCGTGAGCG TGCCCGGGCG CTCGGAATGT GGGGTGCGAC CGCCGCCGGT
GGAGGTGCGA TGGGCGCGCT CGCCGGAGGT GTGCTGACCG AGATCGCCGA CTGGCGCTGG
GTGCTGTTCG TCAACGTGCC GATCGGACTG GTGCTGATCG TTGGCGCGCG GGCGGCGTTG
ATCGAATCCC GCGGTCAGGC TCGCGGAGTG CGCGATCTCG ACATTCCCGG CACTGTCACC
GTCACGGCCG GGCTGACGGC GCTGGTCTAC GGCATCGTGC GGACGGAGTC CAGCAGTTGG
GGCTCGCCGG TGACCATCGC GTGGCTGGCC GGCGCGGTCG TGTTGCTCGC GGCCTTCCTG
ATCATCGAGT CGCGTACCGC GAACCCACTG GTGCCACTGG CCATCTTCCG GCGCCGGGCG
CTGCGGTACG CGAACACGAT CGGCGTGGTG ATGGGCTCGA TCATGTTCGG GCTGTTCTTC
TTCCTGACCC TGTACCTGCA GCAGGTCAAG GGCCAGGGGC CGCTCGAGGC CGGCCTGGCG
CTGGTGCCCA TGCCGATTAT GATCATTGTC GGGTCGCAGG TCAGTTCCCG GACGGTCGGC
CGGTTCGGCC CCCGTCCGCT GATCATCGGC GCGTCGGTGA TCGTGGCGTC GAGCGTCGGC
TGGCTCAGTG CCCTGAGCGC GCACGGCTCC TACTGGGCCG AGGTTTTCGG GCCGCTCGCG
CTGCTGGGCT TCGGGATGGG CATCAACATG GTCGCGGTGA CGACCGCCGC CACCGCCGGT
GTGCCGCCGC AGTTGGCCGG GCTGGCGTCC GGTCTACTCA ACACCGCGCG GCAGATCGGC
GCCGCCGTCG GCCTGGCCGT CCTGGCGATC ATCGCGGACA CGCACACCGA CAACGAGCTG
GCCGCGGGAG CGGACCGGGC CGACGCGCTG ACCTCGGGGT ACTCGCTGGG ATTCCTGGTG
TGCGCGGCGC TCATGCTCGG GGCCGCCGTG CTGGCGGTGT TCATGCCGCG CAAGGAGGTG
CTCGTCGCCC AGGCGGGTGC CGCCCAGGCC CGCCCGGAAC CGGAGCGGGT GGAGGCGCTC
GCCGAAGCCT GA
|
|---|
| Protein sequence | MAKSRGKPRA RSAGSGGAGA PARRGTGPAT PAAASEAATS EAIPEATADA AGGAGDLGPT
GGNGAEADVA AEAADVAAGE VAADEIAGGE AADGEAGDAA AAGAGVAHEE ADREEADVVA
PAGEVSAEEA GVAAGTVATG EAVAEKAEAV AAGAGVAEEM AERQSLPAET KPEVVVVPEG
EAKPEVAAEP EVEAKVGSET EVGSGVEAQA AVADENALVS AEPEAGAEPV EIVIPEQVTA
AASMVAPAGA AEKETVAPGQ VAAEKTEEKT AAPAGRGRRV PAWAVLAVCC FAQFMVVLDV
SIVNVALPSM QTELGLSSSG LQWVVNSYTL AFAGLLLFGG RAADLFGRRR VFITGLTLFT
AASLAGGLAN DQTMLIVARA VQGLGGAVLA PATLSMLMTS FPDPRERARA LGMWGATAAG
GGAMGALAGG VLTEIADWRW VLFVNVPIGL VLIVGARAAL IESRGQARGV RDLDIPGTVT
VTAGLTALVY GIVRTESSSW GSPVTIAWLA GAVVLLAAFL IIESRTANPL VPLAIFRRRA
LRYANTIGVV MGSIMFGLFF FLTLYLQQVK GQGPLEAGLA LVPMPIMIIV GSQVSSRTVG
RFGPRPLIIG ASVIVASSVG WLSALSAHGS YWAEVFGPLA LLGFGMGINM VAVTTAATAG
VPPQLAGLAS GLLNTARQIG AAVGLAVLAI IADTHTDNEL AAGADRADAL TSGYSLGFLV
CAALMLGAAV LAVFMPRKEV LVAQAGAAQA RPEPERVEAL AEA
|
|---|
| |