| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0724 |
|---|
| Symbol | |
|---|
| ID | 5669140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 840918 |
|---|
| End bp | 841577 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 641239651 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001505088 |
|---|
| Protein GI | 158312580 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00634276 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0883262 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACAG GCCGAGGCAT GCTCATCGTG GCGTCACTGT CGCTCGCGGC GTCGGCCGCC
GGCTGCGGTG GGTCGGACGG ACCGGCGGAC CAGGCTGTGT CGGCTCCGCC GGGCCCGCCG
GTCGTCTCCG GGACCAGCCA GCCGCCGGCC GCGCCCACCG CGCGGCCGAC CGCCGTGACG
GGCTCGACCG GCCCGTCCGC CGGGATCCCG GTCACGGGTG CCGGCGGTGC CGGGCCGGCC
TGCGCCTCCA CCGGCCTCGC CGCGTCCCTC GAGGACGTCC AGGGCGCGGC GGGCCACGTC
TACGGGCGGA TCGTGCTCAG GAACACCGGT CCCGGCACCT GCTCGGTCGT CGGCTACCCC
GGTGTGTCGG TGGTGGACGC CACCGGTGGC CAGGTCGGGG CGGCGGCTGA CCGCACGGGG
CCGGCCGGCA CCCCGGTGAC GCTGCCACCG GGCGGCAGCA CCGGCGCGAC GCTGGCGATC
ACGCAGGCCG GGCTGCTTCC GGGCTGCGAG GAACCAGGTC AGGCGGTGCG GGGCGCGAAT
CTGCGCGTGT ACCCGCCCGA CGACCGTGGG AGCCTGCTCG CGGCACTGCC GGCCGGTGTC
GAGACGTGTC GGGATCCGGC TGTGCACCAG CTCGCGGTCG GTGCCTTCGG CCAGCCCTGA
|
|---|
| Protein sequence | MRTGRGMLIV ASLSLAASAA GCGGSDGPAD QAVSAPPGPP VVSGTSQPPA APTARPTAVT
GSTGPSAGIP VTGAGGAGPA CASTGLAASL EDVQGAAGHV YGRIVLRNTG PGTCSVVGYP
GVSVVDATGG QVGAAADRTG PAGTPVTLPP GGSTGATLAI TQAGLLPGCE EPGQAVRGAN
LRVYPPDDRG SLLAALPAGV ETCRDPAVHQ LAVGAFGQP
|
|---|
| |