Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_0575 |
Symbol | |
ID | 5668992 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 666727 |
End bp | 668487 |
Gene Length | 1761 bp |
Protein Length | 586 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641239502 |
Product | diguanylate cyclase |
Protein accession | YP_001504940 |
Protein GI | 158312432 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGAAC TCCGCAACGT CGTCGTTTCT GCACATAGTC CGTGGCGTCT GACCGGTTCG GGCCGTACGC CACGAGTGTT GCGGTGCGCC ATCGCCGCCT CCCTGGCGCT GCTGGGGCTG GATGTCGCCT TCGCGGTGCT GCTGGACCTG CGCTCCGCCC GCGTCGCCAC GGACCTCGTC TCCACCGCAG CCCAGTTCGC CGCCGCGGCC GCCTGTTTCT GGACCGCCCG GCGGGTACGC GGGGCGGAGC GCCGCTGGCG GGTGCTCATC GGTCTCACCG CCGCCGGAGC GATGCTCGCC AGCCTCTCGA TCGCACCGAC GTTGCTGGCC GGAGACCTGC CCCACAGGCA AGGCATGTCC CCGGCGTATG CCGTCTTCCT CTCCCTCTAC GGGGTGGCCC TGGCCGGGCT GCTGTCCCTG CCCACCGACC CGGTGGACAG CCGGGGCGGG AGTGCTGGCA GGCGATGGTA CGGCGCCCAC CGCTGGTATG CGATCACCCT GCTGGACTGC CTGCTGATCG CCGGCTCGCT CGTCCTGCTG CAATGGGGGA CGGTGCTCTC CGCGGTCGTC CAGACGGGCC CCGACATCAG ACCATTCCGG CTCGCCCTGA CCCACCAGGG TGCCGGCCTG ATCCTCGCCA CCGCGGTCGT GCTGATCGCC AGCTTCCGCC GACCCCGCGC CCCCGCAACG CTGGCACTAC TGGGCACCGG CCTGCTGGCC TACGGACTCA CCACCAACAT CATCTCCTAC GTCGCCGCGG AGTACGGGTT CCACCTGCCG CCCTGGGGCC TGATCGGGTT CGCTCTCGCC TACCTGCTGG TCTTCCTCGC CGCGTTCGTC CCGGTCCCGA CCCGCACGCC CCCCGAGGGC CCCGCCCCGC CCAGCCCGCG GGCGATGTGG GCACACGCCG CGCTGCCCTA CGCCGCGCTC ACCGCCGCGG GCCTGCTGAT CCTGGGCAAG CTGGCCACCG GTGCCCGCCT CGACCGGTTC GAGACCTACG GCATGATCAC ACTGCTGGTG CTCGCCCTGC TCCGGCAGAT GGTCACCCTC GCAGAGAACA CCCGGCTACT CGCCGAGATC CGGGAACGCG AACGGCAACT GCACCACCAG GCGTTCCACG ACCCGCTGAC CGGCCTGGCC AACCGGACAC TGTTCACCCG CCGGCTGCAA CGAGCCCTCA CCCAAGGCAC CGACAGCGAC ACCACCCACA CCCCCGCCAT CACCTCCGGC GAGGACACGG TGTCCGTCCT GTTCCTCGAC CTTGACGGCT TCAAAAAGGT GAACGACACG TTCGGCCACG CCGTCGGCGA CGAACTCCTC CAGATCAGCG CCGACCGGCT ACGCGCGGAA ACCCGCGCGA TCGACACCGT CGCCCGCCTC GGCGGCGACG AGTTCGGCGT CATCCTCGAC GGCGGCGGCC CCGACGACCC CCGCCGCATC GGCGAACGGC TCGCCACCGC CGTCCAGGCC CCCTGCCTGC TGGCGGGGCG GCCTTACACC CCCCGCGCCA GCCTCGGCCT GGTCACCCTC GACAGCACCA CCACCCGACC CGCCACCCCC GACATCCTGA TCCACCAGGC CGACCTGGCC ATGTACACCG CCAAACGCAC ACAAACCGGC GGACTCGTCA TCTACCAACC CGACCCGTCC ACCCCCACGA CCACCACCAA CCATCATCCC GACCACCCGA CACGATCGGT TGAAAGTTCG GTTTGTGGGT TTCGGGACCG CCCGGCGCAC GATCCGGGTC CCGTTCCGTG A
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Protein sequence | MPELRNVVVS AHSPWRLTGS GRTPRVLRCA IAASLALLGL DVAFAVLLDL RSARVATDLV STAAQFAAAA ACFWTARRVR GAERRWRVLI GLTAAGAMLA SLSIAPTLLA GDLPHRQGMS PAYAVFLSLY GVALAGLLSL PTDPVDSRGG SAGRRWYGAH RWYAITLLDC LLIAGSLVLL QWGTVLSAVV QTGPDIRPFR LALTHQGAGL ILATAVVLIA SFRRPRAPAT LALLGTGLLA YGLTTNIISY VAAEYGFHLP PWGLIGFALA YLLVFLAAFV PVPTRTPPEG PAPPSPRAMW AHAALPYAAL TAAGLLILGK LATGARLDRF ETYGMITLLV LALLRQMVTL AENTRLLAEI RERERQLHHQ AFHDPLTGLA NRTLFTRRLQ RALTQGTDSD TTHTPAITSG EDTVSVLFLD LDGFKKVNDT FGHAVGDELL QISADRLRAE TRAIDTVARL GGDEFGVILD GGGPDDPRRI GERLATAVQA PCLLAGRPYT PRASLGLVTL DSTTTRPATP DILIHQADLA MYTAKRTQTG GLVIYQPDPS TPTTTTNHHP DHPTRSVESS VCGFRDRPAH DPGPVP
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