| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0435 |
|---|
| Symbol | |
|---|
| ID | 5668858 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 514801 |
|---|
| End bp | 517170 |
|---|
| Gene Length | 2370 bp |
|---|
| Protein Length | 789 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641239367 |
|---|
| Product | glycoside hydrolase family 3 protein |
|---|
| Protein accession | YP_001504806 |
|---|
| Protein GI | 158312298 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCCCA CCTGGCGCGA CGAGCACCTG GAGGCCGGCC ACCGGGCCGA GCTGCTGCTG
GCCGAGATGA CCACCGCCGA GAAATGCCAT CAGCTCACCG CCCGGATGGC GTGGTCGCTG
GTGAAGGCCG ACGGCACCGA CGCCGACGGC GCCGAGGACG TGCTGCGCCA TCCGCCCGGG
CATGTGGCGC AGCTGATCCT CGACGACCCG GCGCAGTTGG CCGCGATGGT CGGCACGATC
CAGAAACAGG TGCTGTCCCG TAGCCGGCTC GGAATTCCGG TGCTCTTCCA CGCCGAGGCG
CTCAGCGGCT TCCTCAACGG TGGGCACATG GTGTTCCCCT CCGGCACAGG GCTCGCCGCC
GGATGGAGCC CCGACCTCGT CGAAGAGATG ACCGACCTGA TCCGGCGGCA GATGCGCCGC
ACCGGTCTGA TGCACGCGCT GTCACCGGTG CTCGACGTGG CCCTCGACCC GCGGTGGGGA
CGCGTGCACG AGACGTTCGG TGAGGACCCG TACCTCTGTG CGGCCTTGGG GGTGGCCTAT
GTGCGCGGCC TGCAGGGGAC CGACGTCTCG CAGGGCGTGA TGGCCACCGG CAAGCACTTC
CTGGGATACG CGGCGCCGCC GGGCGGCCTG AACCTGTCGG CCTTCGAGTC CGGCGCCCGG
CGCACGCGTG ACCTGTTCGC CTATCCGTTC GAGGCGGCGA TTCGCCTGGC CGGGCTGCGG
TCGGTGATGA ACTCGTACGC CGACGTCGAC GGCGTACCCG CCGGGGCCTC GCCGGAGGTG
CTGCAGGACC TGCTGCGCGA CACGCTCGGC TTCGACGGCT TCGTCTCCTC CGACTACACC
ACCCTCGAGC AGCTCGTCGA CCGGCAGCGG ATCGCGAAGG ACGCGGCCGA GGCCGGCCGC
CTGGCCATCC GGGCCGGGCT CGACGTCGAG ATGCCCAATC CGTACGGGTA CGGCGACGTG
CTCGCCGCCG AGGTCGAGCG CGGGGTCGTC GACGTGCGGC ACGTCGACAA CTGCGTCCGC
CGGGTCCTGC GGGCGAAGTT CGAGGTCGGG CTCTTCGAGC ACCCGTACCC GGTGGAGAGC
ATCGACGTGG CCGCGGCGGC CCGCGAGGGC GCCGACCTGT CGTTGGAGCT GGCCCGGCGC
TCGATCGTGC TCGGCCAGAA CAACGGCATC CTGCCCCTGA CCCCCGGCGG GCTCGACATC
GCCGTCATCG GGCCGCACGC CGACGCGCCG ACGTTCCAGT TCCCGACCTA TACGTACGTG
TCGTGGCGCG AGGCCAACGA GGCCGTGATG CGCGGCGAGC TCGGCACCAT GAACGGCGCC
GAGGAGACCG TGTCGGCCTG GTATTCGGCC CTGTTCGGAG CGTGGGACGG CGACAGCGTG
GCTCCCTCGC TGGCGGCTGA GATCGGTGAT CACGCCCGCA CGGTCCGGGT CGAGCGCGGC
TGCACCCTGA CCGAGGATCT AGGTTCTCTC GACCCGGCGG TCGAGGCGGC GCGGGCGGCG
GACGTCGTCG TGCTGGCGCT GGGCGGGGCG AGCCTGTGGT TCACGGGGGA GCGGACCGAG
GGGGAGGCCA GCGACACCGC GGACATCACC CTGCCGGCGG CGCAGGTGCG GCTGGCCGAG
GCAGTGGCGG CCACCGGCAC CCCGCTGGCG GTCGTGCTCG TGCAGGGCCG GGCCTACGCG
CTGCCGAAGG TCATCCAGGA CGCCGCGGCC ATCGTCGTCG CCCCGTACGC CGGACCGTTC
GGCACCCAGG CGATCGCCGA CGTGCTCTTC GGCGTGGTCA ACCCCTGCGG CAAGATGCCG
TACAGCCTGC CCCGGCACAG CGGCCAGATC CCGGTCTACC ACCACCAGAA GGCCGGGTCG
GGCTACCGCA ATCCGTTGCC GCCCAGCGTC TCCCGCCACT ATCTCGACCT GGAGGCGACG
CCGTTGTGGC CGTTCGCCCA TGGGCTGAGC TACACCACGT TCGCGCTGAG CGACCTCGAC
TGCGGTGCCG ACATCGACGC GTACGGCACG GCCCACGTCA GCGCCACCGT CGCCAACACG
GGGCCACGGG ACGGGGCCAC GGTGATGCAG CTCTACCTGC GGGTCAACAC CTCACCGGTG
ACCCGGCCCG CCCAGCAGCT CGCCGGCTTC ACCCGGGTCG AGCTGGCCGC CGGCGAGAGC
CGCCGCGTCA CGTTCGAGAT CGACGCCTCG CAACTGGCGT ACACCAGTCT CGCCCGCCAG
GTGGCGGTCG AGCCGGCCCT GGTGGACGTC TTCGTCGGCC TCGACTCCGA CGACCGGTCG
CTGGCGGGCT CGTTCGCCGT GGTGGGGTCC GCGCGGGTGG TCGAGGGCGC CGAGCGGTCC
TTCCTCTCGC GAGCACGCCC GCACCCATAG
|
|---|
| Protein sequence | MSPTWRDEHL EAGHRAELLL AEMTTAEKCH QLTARMAWSL VKADGTDADG AEDVLRHPPG
HVAQLILDDP AQLAAMVGTI QKQVLSRSRL GIPVLFHAEA LSGFLNGGHM VFPSGTGLAA
GWSPDLVEEM TDLIRRQMRR TGLMHALSPV LDVALDPRWG RVHETFGEDP YLCAALGVAY
VRGLQGTDVS QGVMATGKHF LGYAAPPGGL NLSAFESGAR RTRDLFAYPF EAAIRLAGLR
SVMNSYADVD GVPAGASPEV LQDLLRDTLG FDGFVSSDYT TLEQLVDRQR IAKDAAEAGR
LAIRAGLDVE MPNPYGYGDV LAAEVERGVV DVRHVDNCVR RVLRAKFEVG LFEHPYPVES
IDVAAAAREG ADLSLELARR SIVLGQNNGI LPLTPGGLDI AVIGPHADAP TFQFPTYTYV
SWREANEAVM RGELGTMNGA EETVSAWYSA LFGAWDGDSV APSLAAEIGD HARTVRVERG
CTLTEDLGSL DPAVEAARAA DVVVLALGGA SLWFTGERTE GEASDTADIT LPAAQVRLAE
AVAATGTPLA VVLVQGRAYA LPKVIQDAAA IVVAPYAGPF GTQAIADVLF GVVNPCGKMP
YSLPRHSGQI PVYHHQKAGS GYRNPLPPSV SRHYLDLEAT PLWPFAHGLS YTTFALSDLD
CGADIDAYGT AHVSATVANT GPRDGATVMQ LYLRVNTSPV TRPAQQLAGF TRVELAAGES
RRVTFEIDAS QLAYTSLARQ VAVEPALVDV FVGLDSDDRS LAGSFAVVGS ARVVEGAERS
FLSRARPHP
|
|---|
| |