| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0337 |
|---|
| Symbol | |
|---|
| ID | 5668761 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 403117 |
|---|
| End bp | 405732 |
|---|
| Gene Length | 2616 bp |
|---|
| Protein Length | 871 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641239268 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_001504709 |
|---|
| Protein GI | 158312201 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0174987 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCACCCAG CCGTTCCCCG TGTTCCCCGT GTACCCCGTG TACCCCGTGT TCGGAGCGTT
CCCGGTGCCA CGGTGGGTCC AGGCGTGATC CGGTCGAGAC TCCGCGGCGC GGCCGACGCG
CGGTCCACGT GGCAATCAGG CCTGTCCGCG CCGGCCTCCG GCCTCGCCTC ACGGCATATC
GGGCCCGACT CGGCGCGCCG CCGCCGAGTC ACACCGAAAC GGCTGCTCGG CATCCTCACC
ACCAGCGTGG CGGCGGGCGT TCTGGTCGGC ATGCTCGCGC TGCCCGTCGT CGGCCTGGCC
GGCGTGACCG CCAAGGGCGG CGCGGACCAT TTCCTTTCTC TCCCCGCGAA TCTGACCGTC
CCCCCGCTGG CCCAGCCCTC ACGCATCCTG GACGCCGCCG GAAACCAGAT CGCGGTGCTG
CGCGGCGAGC AGGACCGCGA GATCGTCGCC CTGGACAAGG TCCCGCCGCA GATGCGCCAG
GCGATGATCG ACATCGAGGA CGCGCGCTTC TACGAGCACA CCGGTGTCGA CTACCGCGGA
ATGATCCGCG CGTACCTCGC CAACCAGGAG TCCGGCGGGG TCACCCAGGG CGGATCGACC
CTCACCCAGC AGTACGTGAA GAACGTCCTG CTGGCCTCCG CCCGGACACC GGAGGAAAAG
GCGGCCGCGA CCGAGCAGAC GGTCGACCGC AAGCTCCGCG AAGCCCGTTA CGCGCTGTAT
CTGGAAGAAC ACCTCACCAA GGACGAGATC CTCGAGCGGT ACCTCAACAT CGCCTATTTC
GGCGACGGCG CGTACGGCGT CCAGGCGGCC GCCCGGCACT ACTTCAACAT CGACGTCAGC
CAGCTCGGCG TCACCCAGTC GGCGATGCTG GCCGGCCTGG TGAAGAACCC CACCGCGTAC
AACCCGGCGC TTCACCCGCA GGCCGCCAGG GAACGCCGCA ACATCGTCCT CGACCGGATG
CACGAGCTCG GCCACCTCGA CGCCGCCGCG TGGAAGGCGG GCCGGGCCGA GGAACTCGTC
CTCGACCGCC CGGCGCGGTC ACCGGACGCC TGCCAGGACT CTTCCGCCCC CTTCTTCTGC
TCCTACGTCC GCCAGGTGCT GCTGGCCGAC CGGACGTTCG CCGCCACCCC CGAGGACGCC
CGCCGGCTGC TGTTCGAGGG CGGGCTCACC ATCCGGACCA CGCTCGACCC GGTCGCGCAG
GGCGCGGCGC AGACATCCGC ACGCGAGGTG ATCCCCACCG GGAACCGGGT CGCCGCCGGC
GTCGCGATGG TGCAGCCGGG CACCGGCAAC GTGCTGGCGC TCGCCGTGAA CCGGGATTAC
GGCACGCCGG ACGACAACCA GCCGCCGGCG CTGACCGCCG ACTTCGTCCA CACCAAGGAG
ATCTACCCGG TCGACCCCGA CTCGTTCTCG CCCGGCTCCA CGTTCAAGGT CTTCACCCTG
GCCGCAGCGC TGGAGAACAA CATCCCGCTG TCGACCACCT TCCACTCGCC GCTGTGCTAT
CACTCGGACC GCTTCCCCAA CCCGGATCCG GGCGGGAAGA ACTGCTACAG CAACGCCGAC
CCGAGCGAGG ACGGCTTCTA CTCCCTCACC ACGGCGACCT GGAACTCGGT CAACACCTAC
TACATCCAGC TCGCCGAGCG CCTCGGCGTC ATGAAGACCG CCGAGATGGC CCGCCGGCTA
GGCGTCTCCT CCTGCCGGAT CCGGCCGAAT GAAGAGAACG ACCCCGAGTG CAAGGGTGTG
GAGGGGATCG GTCCGGTCGA CGGCTCGGCG ATCCTCGGCT CGAACGAGAT CAGCACGCTG
GACCTCGCCA CCGCCTACGC GACGCTCGCC GCCCGCGGAA ACCGCTGCTA TCCCCGCACA
GTGCTCTCGA TCACACAGCG CGTCGGGACG GCTGACCGTC CGCTGGCCTT CAACACCGGA
AAGCCGTGCG AACAGGTCCT CGCCCCCGGG ATCGCCGACA CCGTCGCCTC GGTTCTCCAG
GGCGTCATCA ACCACGGGAC CGCGTCCGGG AACGCGCAGA TCGGACGTCC GGCGGCGGGC
AAGACCGGAA CGGCCGAGGC ATTCAGCACG GCGTCCTTCG CCGGTTTCAT CCCGCAGCTG
GCCACCGCGG TCACCCTCGC CGACCCGCGC GGCCCGACGA CTCATCAGCT TCGCAACGTG
CTCACCAGCC GTGTGGTGTT CGGCGGCGGA TTCCCGGCCC AGATCTGGGC CCGGACGATG
ACGCGCACGA TCGACGGCTT GGCGCTGCCC GTCATGCCAC TGCCGGCGCC GGACAACACC
CAGCCGCAGG TGCCCAAGAA GGCCCTGCCG GACGTCCGCG GGCAGAGCCA GCAGGCGGCC
GAGTACGCTC TGCGCTCGCT GGGATTCCGG GTCCGCTCGG AGACCGTGCC GCACGTGGCC
CCGCCCGGGA TCGTCGTCGG CATGGCTCCC GGGCCCGGGG AGGAGATCTC CATGGATACC
GAGGTGGTGC TCCAGGTGTC CGGCGGCCTC ACCGGCGCGG TGCTGCTGCC GAACGGCGCC
GGCGCACGCC CCGGCCAGCC CGCCGCCCCA CCGGCGGGGG ACGGCCGCGC AGGCATCCCG
GGGCTGCCGG ACCTGCGCAA CCAGCTCCGG AACTGA
|
|---|
| Protein sequence | MHPAVPRVPR VPRVPRVRSV PGATVGPGVI RSRLRGAADA RSTWQSGLSA PASGLASRHI
GPDSARRRRV TPKRLLGILT TSVAAGVLVG MLALPVVGLA GVTAKGGADH FLSLPANLTV
PPLAQPSRIL DAAGNQIAVL RGEQDREIVA LDKVPPQMRQ AMIDIEDARF YEHTGVDYRG
MIRAYLANQE SGGVTQGGST LTQQYVKNVL LASARTPEEK AAATEQTVDR KLREARYALY
LEEHLTKDEI LERYLNIAYF GDGAYGVQAA ARHYFNIDVS QLGVTQSAML AGLVKNPTAY
NPALHPQAAR ERRNIVLDRM HELGHLDAAA WKAGRAEELV LDRPARSPDA CQDSSAPFFC
SYVRQVLLAD RTFAATPEDA RRLLFEGGLT IRTTLDPVAQ GAAQTSAREV IPTGNRVAAG
VAMVQPGTGN VLALAVNRDY GTPDDNQPPA LTADFVHTKE IYPVDPDSFS PGSTFKVFTL
AAALENNIPL STTFHSPLCY HSDRFPNPDP GGKNCYSNAD PSEDGFYSLT TATWNSVNTY
YIQLAERLGV MKTAEMARRL GVSSCRIRPN EENDPECKGV EGIGPVDGSA ILGSNEISTL
DLATAYATLA ARGNRCYPRT VLSITQRVGT ADRPLAFNTG KPCEQVLAPG IADTVASVLQ
GVINHGTASG NAQIGRPAAG KTGTAEAFST ASFAGFIPQL ATAVTLADPR GPTTHQLRNV
LTSRVVFGGG FPAQIWARTM TRTIDGLALP VMPLPAPDNT QPQVPKKALP DVRGQSQQAA
EYALRSLGFR VRSETVPHVA PPGIVVGMAP GPGEEISMDT EVVLQVSGGL TGAVLLPNGA
GARPGQPAAP PAGDGRAGIP GLPDLRNQLR N
|
|---|
| |