| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0301 |
|---|
| Symbol | |
|---|
| ID | 5668725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 356152 |
|---|
| End bp | 357639 |
|---|
| Gene Length | 1488 bp |
|---|
| Protein Length | 495 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 79% |
|---|
| IMG OID | 641239231 |
|---|
| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
|---|
| Protein accession | YP_001504673 |
|---|
| Protein GI | 158312165 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
|---|
| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.306816 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.359566 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGCTGG GCGCGCGGGC CGGTGGCCTC ACGGCACTGG CCGGAGCGCT GCTCGCCGGA
TCGCTCTCGC CCGGTCCGGC GGCGCCTCCG GGCGGCGCGT CACCGGCCCC GCCGGGTGTA
CGCGCCGAGG CGTCCGCGCT GCCGGGGCTG GACCCGGACG CGCCGAAGGC CGACCCGGCC
GCGGTGGCCG CGCGGCTGCT CGGGCCGCTC TCCGACCCCG TGCTGGGCGG CCCTGCCACG
CTGGTGGTCG ACGCGCTGAC CGGGCAGGTG CTTTTTGCGA ACCGCCCCAC CGAGCCGACC
GCTCCCGCAT CCACGGTCAA GATCGCCACG GCGACCGCGG CACTCACCGC GCTCGATCCG
GACGCCCGCC TGCGCACCCG CGCGGTCTAC CTCCCGCCGG CCAGCGCGCC ACCCGCGGCG
ACCGCAGGGT CACCTGCGGC AACCACCGGG TCGGCGGCTG CGCCCGGCCG GGCGCCCCTG
GCCCCAGGCG GCACGCTCTG GCTGGTCGGC GCGGGCGATC CGACCCTGAC CGCGGCGACC
GGGGCGGCCG GGTACCCGCC GGCGGCCCGG TTGAGCGACC TCGCCGAGCA GGTCCGCAAG
GCCGGCATCA CCGCTGTCGG CTCGGTGGTC GGCGACGGGA CGGCCTACGA GGGCCCGGGG
ATGGCGCCCG GCTGGCGCGA CGGCTACGTG ACCGACGGGA ACGTGACCCC GGTGTCCGCG
CTGTCGGTCG ACGCTGGCCG CGCGGCGCCC GGCTCCGCCG GGCCGCGCAG CCTGACCCCG
GACGCCGCCG CGGCGGCCGC GTTCGGCACG GCCCTCACCG CGGCCGGCGT GTCCGTCGGC
TCGGTCTCGA CGGGCCGGGC GGACGCGGCG GCCCGCGAGG TCGGGTCCGT GCAGAGCCCG
CCGATCCCGG TCCTGGTCGA GCGGATGCTC ACCGACTCCG ACAACGACCT GGCGGAAAGC
CTGGGACGTC AGGTCGCGAT CGCCCGGGGG CTTCCGGCGA GCTTCGACGG GGCCACCCGG
GGCGTGCTCG GCGCCCTTCG CGACGCGGGC ATCCCGACCG ACGGCGCCTC GCTGCGCGAC
ACCAGCGGAC TTTCGATCGA CAACCGGATC GCCCCGGCGA CGCTCGTCGC GGCGCTGCGG
ACGGCCGCCC TGCCGGGTCA TCCGGCCCTG CGGACGGTCC TGTCCGGGCT GCCGGTCGCG
GGCTTCACCG GCACGCTCGG CGACCGGTAC GGCCCCGGCG ACACCTCGCC GGGGGCCGGC
GTCGTCCGGG CGAAGACCGG CAGCCTGCGC ATCGTGACCA GCCTCGCCGG CATGGTGACC
GACAGCGACG GACGGCTGTT GCTGTTCGGG CTGTTCGCCC CGGTCGAGGA GCAGGGCCTG
ACCAAGATGG CGCTGGACCG GGTCGCGGCG GCCCTCGCCT CCTGCGGATG TCCGCCGGCC
GGCGCCGGGC CGCCATCAGC CGGGCCACCG GTGCCGCCGG GCGGCTAG
|
|---|
| Protein sequence | MPLGARAGGL TALAGALLAG SLSPGPAAPP GGASPAPPGV RAEASALPGL DPDAPKADPA
AVAARLLGPL SDPVLGGPAT LVVDALTGQV LFANRPTEPT APASTVKIAT ATAALTALDP
DARLRTRAVY LPPASAPPAA TAGSPAATTG SAAAPGRAPL APGGTLWLVG AGDPTLTAAT
GAAGYPPAAR LSDLAEQVRK AGITAVGSVV GDGTAYEGPG MAPGWRDGYV TDGNVTPVSA
LSVDAGRAAP GSAGPRSLTP DAAAAAAFGT ALTAAGVSVG SVSTGRADAA AREVGSVQSP
PIPVLVERML TDSDNDLAES LGRQVAIARG LPASFDGATR GVLGALRDAG IPTDGASLRD
TSGLSIDNRI APATLVAALR TAALPGHPAL RTVLSGLPVA GFTGTLGDRY GPGDTSPGAG
VVRAKTGSLR IVTSLAGMVT DSDGRLLLFG LFAPVEEQGL TKMALDRVAA ALASCGCPPA
GAGPPSAGPP VPPGG
|
|---|
| |