Gene Franean1_0140 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_0140 
Symbol 
ID5668565 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp168435 
End bp170036 
Gene Length1602 bp 
Protein Length533 aa 
Translation table11 
GC content78% 
IMG OID641239068 
ProductFHA domain-containing protein 
Protein accessionYP_001504513 
Protein GI158312005 
COG category[T] Signal transduction mechanisms 
COG ID[COG1716] FOG: FHA domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.425814 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00649643 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGGCGTGC TGCAGCGCTT CGAACGGCGC CTTGGCGGCC TCGTCGAGGG TGCGTTCGCG 
AAGGTCTTCA AAGGCGGGGT CGAACCCGTC GAGATCGCCA GCGCCCTGGC TCGCGAGACC
GACGACCGGC GTGCGAGCAG CTCGAACCGT GTCCTCGTCC CGAACGAGTT CGCCGTCGAG
CTGGCCGGTG GCGACTTCGC CCGGCTGGCC CCCTACACCC GGGCGCTCTG TGACGAGCTG
GCGGAGATGG TCCGTGAGCA TGCCGCGGAG CAGCGCTACA CCTTCGTCGG CCCGGTGACT
GTCCGACTGG CGGAGGCCGC CGATCTCGAC ATCGGCGTCT TCCGAATCCG CAGCAGTGTG
GCCTCCGCGG ATCCCGCGGT GGTCGGTGGC CGCCGGCCGC GGCCGCGGCC GGCGGCGCCG
GGTACCCCGC ATCTACTGAT CACGACACGC GCGCCGGGCG GGTCGGGCAG CGGCGAGCGG
GAGTACCCGC TGGACGCGGA GACCACGGTG ATCGGGCGCA GCGTCGAGTG CGACATCCGG
CTGAACGACA CGGGCGTCTC GAGGCGGCAT GGCGAGATCC GCCGCCTGCC TGACGGGCAG
TTCCTGTACG TGGATGCCGG CTCCACGAAC GGCAGCCTGG TCAACGGGCG CGCGGCGACG
CAGGTGAAGC TTGTCAACGG CGACCGGATC GAGCTGGGGA CCGCGGTCGT GGAGTTCCGG
CGTGAGGAGG CCCGCGGCGC AACCGGCCCG CGTGGGCCGC GCACGCCGGT CCCGGCACGC
TCGTCACCGC CGCCGGGCCG CCCGACCCCG CCTCCGGCGG ATCACCGCAC GCCGCCGCCG
TTCGACCCGC GCCAGCCAAC TCCGTCGACC CGCCGGGGTA CTCCGTCGCC GGACGACCGC
TATGCCCGCC CGGAGCCGGG CGTCCCGGGT GGTCCGGGCG GCCGCGAGCC CGGTTACCGC
GACCGCCCCG GCCGGGATCC GCGCGATGGC GACTACCGCG AGGGGCCGTC TCCGCGTTTC
CGGGACGACC CGCCCGGCCG GCCCGCCGGC GACCACCGGC CGGACGCGTA CCGCGAGGGG
CCGTCGCCCC GCTTCCGCGA CGAGCCGGGC GCGCCGCCCG ACGGTTACCG CGAGGGGCCG
TCCGCGCGTT TCCGGGACGA GCCGCCCGCC CGGCCGCCGG CCGGGCCCCG GTCGGACGGC
TACCGCGAGG GGCCCTCGCC CCGCTTCCGC GACGACGGGG CTCCCGCCCG GGGCCGCCCC
GGGCCGACGC CGCCGCCGAA CGCGCGCCAG GGCGGGGAGC GGGGTGACGG CGGCCGGCGG
GCCCCCGGGC CGGGCCGGGG GCCCGAGTAC GGGCGGGCTG GCAGGCCCGA TCCGGGCCGC
GGTCACCGCG GGGAGCCACC GCGTGCCGGC GCGCGCGGCG CGGGCGGTCC CGCCGACGAG
ATGTACCGCT CGTCCACCGA TCCACGCCAG CGCCCGCCCG CGCGCACCGA CGACGGCCTC
GAGGCGCTGG AGCCTCTCGA CGGCTTCGAC GACGCCGAGA CCCGCCTGCC CAGCCGGGCG
GCGAACCATC CCGGCGACGA CCGCCGGCGC AGGGGCTGGT AG
 
Protein sequence
MGVLQRFERR LGGLVEGAFA KVFKGGVEPV EIASALARET DDRRASSSNR VLVPNEFAVE 
LAGGDFARLA PYTRALCDEL AEMVREHAAE QRYTFVGPVT VRLAEAADLD IGVFRIRSSV
ASADPAVVGG RRPRPRPAAP GTPHLLITTR APGGSGSGER EYPLDAETTV IGRSVECDIR
LNDTGVSRRH GEIRRLPDGQ FLYVDAGSTN GSLVNGRAAT QVKLVNGDRI ELGTAVVEFR
REEARGATGP RGPRTPVPAR SSPPPGRPTP PPADHRTPPP FDPRQPTPST RRGTPSPDDR
YARPEPGVPG GPGGREPGYR DRPGRDPRDG DYREGPSPRF RDDPPGRPAG DHRPDAYREG
PSPRFRDEPG APPDGYREGP SARFRDEPPA RPPAGPRSDG YREGPSPRFR DDGAPARGRP
GPTPPPNARQ GGERGDGGRR APGPGRGPEY GRAGRPDPGR GHRGEPPRAG ARGAGGPADE
MYRSSTDPRQ RPPARTDDGL EALEPLDGFD DAETRLPSRA ANHPGDDRRR RGW