Gene Franean1_0139 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_0139 
Symbol 
ID5668564 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp167892 
End bp168431 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content67% 
IMG OID641239067 
ProductFHA domain-containing protein 
Protein accessionYP_001504512 
Protein GI158312004 
COG category[T] Signal transduction mechanisms 
COG ID[COG1716] FOG: FHA domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0141963 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00495704 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATCCCA CCGCGCCGAG CGAGCTCGTC CTCCTGCTGG TGAAGATCGG CTTCCTGGCG 
CTGCTCTGGG GGTTCGTCCT GGTCGCCGTC CGAGCTGTCC GCCTGGACAT GTTCGGGCCG
ACCAAGCGCC AGCAGCGACG CCAGCCAGTA GTCGCGAGGG CACCGTCCCC CACCCCCGGG
GGGCGTCCCG AACGTGTCAG ATCGCCACGC CAGAGCCCAC GCCCAGCCCC CGCGCCACCC
ATCAACCCGG CTCCGAGCCG GCTCGTGGTC ACAAAAGGGC ATCTTGCCGG CACAACAATC
CCACTAGGTC CCGAGGCAAT CACCATCGGA CGGGCACCGG ACTCGACTCT GGTCCTCGAG
GATGACTTCG CGTCAGGACG GCATGCGAGA CTCGTTCCTC ACGACGGACA GTGGTTCGTC
GAGGACCTCG GCTCGACCAA TGGCACATTC CTCAACCGCA CGAAGGTGAC GAGTCCCATG
CCGGTACCTC TCGGCGCGCC GGTCAGGATC GGGAAGACGG TCCTGGAGCT TCACCGGTGA
 
Protein sequence
MDPTAPSELV LLLVKIGFLA LLWGFVLVAV RAVRLDMFGP TKRQQRRQPV VARAPSPTPG 
GRPERVRSPR QSPRPAPAPP INPAPSRLVV TKGHLAGTTI PLGPEAITIG RAPDSTLVLE
DDFASGRHAR LVPHDGQWFV EDLGSTNGTF LNRTKVTSPM PVPLGAPVRI GKTVLELHR