| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0125 |
|---|
| Symbol | |
|---|
| ID | 5668550 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 149587 |
|---|
| End bp | 150732 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641239053 |
|---|
| Product | rhomboid family protein |
|---|
| Protein accession | YP_001504498 |
|---|
| Protein GI | 158311990 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGGACT CGCCAGCGGG TGATCCGGCC CGTGCGCCGG AAGGCTCTTC TGGTGCGCCC
GGGGGTTCCG GTGGGGCCGG TAGTGCCGGC GAAGCCGAGA TCCCGCGTCC CGCGTCCCCC
CTGCCCGCCG CAGGCGAGCC GCCGCCCGCC GGCGGCCCTC CCAACGGCGG CCCTCCCAAC
GGCGGCCCTG CGTCGGGCGG CCCGCCGCAC GAGCAGGTCG GATGGCGGCC GGAGACCGGC
CCGCCCGCCG GCCACGCCGG GTGGACCCCA CCGCCGGCGG GAGCGCCGAG CCTGCCCCAC
TGCTATCGGC ATCCCGAGCG GGAGACGTAC GTCACCTGCC AGCGGTGCGG GCGTCCCATC
TGCCCGGACT GCATGCGCCC GGCGGCTGTG GGCTTCCACT GCCCGGAGGA GTCCGGCGCC
GGCGGTGGCG GGCGCCCCGA GCGGCGCCGA GAGCCGCGGA CGGACTTCGG TGGCCGGCCG
GGAGCCGGTC GCCGCGGGCT GGTCACCCAG GTTCTGATCA GCCTGTGCCT CGTCGCGTTC
GTCCTGCAGG GCCTGCCCGG GCTGGCGCGC GACTCCGGCT CCCTGAACCA GTTCAGCGCC
GACTTCCGCC TGTACGGCGT GTCTCTCGCG TGGGACGACC AGTACTACCG GCTCCTCACC
GCCGCCTTCC TGCACGTCAA CTACCTGCAC GTCCTGGTGA ACCTGTACGC GTTGTTCGTG
CTCGGCTACC AGCTCGAGGC GATTCTCGGG CGGCTTCGCC TGGTAGCCCT GTTCGTCGCC
TGCGCCGTCG GTGGGAACAC CCTGAGCTAC CTGGTGAACG GTGTGTCCGT GAACTCGGTC
GGGGCGTCCA CCGCGATCTT CGGTTTTTTC GGCGCGTACT ACGTGATCGC CCGGCGGCTG
CGCGCCGACA CGACGCAGAT CCTGATCCTG ATCGGGATCA ACTTCGCGCT CACGTTCACG
CTGTCCTTCA TCGACCGCTG GGGCCACGTC GGGGGGCTGG TGGCCGGGGT GCTCGTCGGC
CTGCTCTACG CCTACGTCCC GCCGCGCCGA ACGGTCGTGC AGGCGGCCGG GGTGCTGGCG
CTTGTCGGCC TGCTCTTCGC GGCGGCCGTC ATCAAGAGCG CGGACCTGAC CACCGCCTTC
GCCTAG
|
|---|
| Protein sequence | MTDSPAGDPA RAPEGSSGAP GGSGGAGSAG EAEIPRPASP LPAAGEPPPA GGPPNGGPPN
GGPASGGPPH EQVGWRPETG PPAGHAGWTP PPAGAPSLPH CYRHPERETY VTCQRCGRPI
CPDCMRPAAV GFHCPEESGA GGGGRPERRR EPRTDFGGRP GAGRRGLVTQ VLISLCLVAF
VLQGLPGLAR DSGSLNQFSA DFRLYGVSLA WDDQYYRLLT AAFLHVNYLH VLVNLYALFV
LGYQLEAILG RLRLVALFVA CAVGGNTLSY LVNGVSVNSV GASTAIFGFF GAYYVIARRL
RADTTQILIL IGINFALTFT LSFIDRWGHV GGLVAGVLVG LLYAYVPPRR TVVQAAGVLA
LVGLLFAAAV IKSADLTTAF A
|
|---|
| |