Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_0099 |
Symbol | |
ID | 5668524 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 117226 |
End bp | 118992 |
Gene Length | 1767 bp |
Protein Length | 588 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641239027 |
Product | diguanylate cyclase |
Protein accession | YP_001504472 |
Protein GI | 158311964 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGGCACA GCCGTCGGCG CGACCGGCTC TTCCGCCGCG CGGCGGTCGG CGCCGCGGTG CTGACGGGCG CCTGCGTGGT TCTCGCCCAG GTGCTCCCCG ACAGCCTGGC GCTGTCCGCC GTCCGACTGA CGGTGATCGG GTTCCTGCTG CTCGGCGGGA CGACCTGCGT GGTCGCCGGG CTGCGTCGCC ATGGCGCCGA GCGGTGGTGG CGGCTTCTCA TGGCGGTAAT GGTTCTCGCC GTGGCGGTGG CGTCGGCCGC GGTGTTCCGG GACACGGCGG CGGGGCGATC TCCCGTCCCC CAGCTGACCC CGGCCTCGCT GGTGTATCTG ATTCCGCTCG CGATGGGTGT CGCCGGCGTG CTGCTCTACC CGACCGACCC CGTCGAGCAC GACGACGCCG AGGACGGCGG GCCGCTGCAC GCCTACCGCT GGTACGCGAT CACGGTCCTG GACGGCATGA TCGTGGTCGG CTCGGTGGCG CTGCTGGTCT GGGCCACCGT GCTGGAGCGC ACGGTCGGGC ACGGCGAACC ACTCGGCCCC GGCCCGCTCT ACTCGATCAT CCTCGCCGCG GTCTCGCTCG TGGTCTTCGT CGTGCTGATC CTGGTGGCCG TGTTCCGCGA GCCGCGCGAC AGCCGCGGCC ACGCGCTCCT GCTCGCGGGC ATGTGCGCCG CCTCGATCTC CGCCATGTGG GAGCTCGCGG TGCTCATCCA CGGCCTGGAC GACGTCCCGC GGCTGACCGA CCTGCCCATT GGCATCGGTG CGCTGCTCAT CGGCCTGGCC GCCATCTCCA CCGATCCCGA TACGGGTGCC ACTACCGGTG CCGACGCCGC TGCCGACGTC GATGTCGATG CCGATGCCGA TGCCGTGGGA GTGGGACTGG CCGCCGTTCC CAGCCTGGGT CGGCGGGCCG CCTCGGCCAG GCTCCGCCGG TGGCACGCGA TCCTGCCGTA CCTCCCGCTG ACCGCGGCCG GGGCGGCGAC GGTGCTCCAG ATCGCCGGAG ACGGCATCGG GCACTGGGAG GAGATCTGGG CGCTGCTCGC CCTGCTGCTA CTCGCGCTGG TGCGCCAGAT GATGACGATG TCGGACAACA TCCGCCTGCT CGGCCAGGTG GAGGAGAAAC AGCGGCAGCT GCGGCACCAG GCGTTCCACG ACCCGCTGAC CGGGCTGGCG AACCGCAGCC TGTTCATCGA CCGGCTCGAG CGGGCGCTGC ACCGCCAGCC GGGCCCCGCC GAGCGCTTCG CCGTCCTGTT CTGCGACCTC GACGACTTCA AGCGGGTCAA CGACGTCCTC GGCCACGCGG CGGGCGACGA CCTGCTGCGG ATCACCGGCG CACGGCTCGC CGGCTGCGTC CGCGCGGCGG ACACCGTGGC CCGCCTCGGC GGTGACGAGT TCGCGATCCT GCTCGTCTCG GCCAACATCG ACGATCCCGA GGCAGTCGGA TGTCGGCTGG CGGCCGCGGT CCGGGCGCCG GTGCGGCTGG CGAGCCACAC CTTCACCGTC GCGGCCAGCG TGGGCCTGGT GACCGTCGAC CCGGAGACCG GGACGGGTGC CCCGCACCAA GGCGCGGACC CGGACCCGGA CCCGGACACG GACACGGAGC CGCGCGCGGA CGTTCCGGAC ACCGCCGAGC AGCTGCTGCA CCGCGCCGAC CTGGCGATGT ACGCGGCCAA GGCCAGGCGC AACGGGGAGC CGGCCGTCTA CACCCCTGAG CTGGTGGGCC CAGGGCGGGC GCGGGCACGG CCCGCCCGGA ACGTCCCGCT GCCCTGA
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Protein sequence | MGHSRRRDRL FRRAAVGAAV LTGACVVLAQ VLPDSLALSA VRLTVIGFLL LGGTTCVVAG LRRHGAERWW RLLMAVMVLA VAVASAAVFR DTAAGRSPVP QLTPASLVYL IPLAMGVAGV LLYPTDPVEH DDAEDGGPLH AYRWYAITVL DGMIVVGSVA LLVWATVLER TVGHGEPLGP GPLYSIILAA VSLVVFVVLI LVAVFREPRD SRGHALLLAG MCAASISAMW ELAVLIHGLD DVPRLTDLPI GIGALLIGLA AISTDPDTGA TTGADAAADV DVDADADAVG VGLAAVPSLG RRAASARLRR WHAILPYLPL TAAGAATVLQ IAGDGIGHWE EIWALLALLL LALVRQMMTM SDNIRLLGQV EEKQRQLRHQ AFHDPLTGLA NRSLFIDRLE RALHRQPGPA ERFAVLFCDL DDFKRVNDVL GHAAGDDLLR ITGARLAGCV RAADTVARLG GDEFAILLVS ANIDDPEAVG CRLAAAVRAP VRLASHTFTV AASVGLVTVD PETGTGAPHQ GADPDPDPDT DTEPRADVPD TAEQLLHRAD LAMYAAKARR NGEPAVYTPE LVGPGRARAR PARNVPLP
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