Gene Spea_4239 details

Gene Information

• Locus tag: Spea_4239
• Symbol: atpC
• ID: 5664623
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: -
• Start bp: 5153462
• End bp: 5153890
• Gene Length: 429 bp
• Protein Length: 142 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 641238907
• Product: F0F1 ATP synthase subunit epsilon
• Protein accession: YP_001504084
• Protein GI: 157964050
• COG category: [C] Energy production and conversion
• COG ID: [COG0355] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)
• TIGRFAM ID: [TIGR01216] ATP synthase, F1 epsilon subunit (delta in mitochondria)

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.785039
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGCCA TGACAGTACA GCTTGATATG GTAAGCGCAG AGAATCATAT CTTTTCTGGT 
CGAGTAGCTC AGCTACAAGT ATCAGGAACA GAAGGTGAAC TAGGTATTAT GCCTGGTCAC 
GCAGCTCTGT TGACAAGTAT CAAGCCTGGC ATGGCGCGCA TCGTCAAGCA AAATGGAAGC 
GAAGAAGTGT TTTATCTTTC AGGTGGTATC CTGGAAGTAC AACCTTCTTC AATTTCAGTA 
TTGGCTGACG TCGTATTGCG TGCCGATGAG ATTGACGAGC AAGCAGCAGC TGAAGCTAAG 
CTCCGTGCAG AAACCGCTAT GGCGGGTGCT GGCGCAGACT TCAACTATGC GGCAGCTGCG 
GTTGAGCTAG CTCAGGCTAT CGCTCAATTG CGCGTAGTCG AGACCATCAA GAAGAACATT 
GCCAGATAA 

 

Protein sequence

MAAMTVQLDM VSAENHIFSG RVAQLQVSGT EGELGIMPGH AALLTSIKPG MARIVKQNGS 
EEVFYLSGGI LEVQPSSISV LADVVLRADE IDEQAAAEAK LRAETAMAGA GADFNYAAAA 
VELAQAIAQL RVVETIKKNI AR