| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_4206 |
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| Symbol | |
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| ID | 5664590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 5102597 |
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| End bp | 5103910 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641238870 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001504051 |
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| Protein GI | 157964017 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGGCC GTCTCCATAT AAAGCACCTT GAGGGTGCTA AGCGCGCTAA CCAACTGATT
TTTCTGGTGG CGGCCTTGAT TGTCGTGACC CTAGTCTGGG CCTCATTTGC CAAGCTCGAA
GAGGTAGTGG TGGGTGAAGG CATGGTAGTG CCGACATTAG CCGTGCAGCA GATTGAGAGT
CTAGATGGCG GGATCTTAAA ACAGGTATTA GTTAGGGAGG GACAGTCAGT CTCGGCGGGA
GAGCCGCTAT TACTGCTCGA TGAACTTCGT TTTGCATCGG CCTACGATGA GGCCAATATT
CAAGCCGCTG CGCTTAAACG GCAAAAGGCA CGCTTAGATG CAGAGATTAG CAGCGTGGTT
ATTGATGATG CAGCGAGCTA CTGGCGCGAT AAAGTGCTAA TCAAGCCGAA GGCAATCAGT
GCACTCGATG TGTCGGTCAG TACCCGCTCG AAAGCGATTT ATCGTTCGCG ATTATCTCAG
TTGTCATCAC AGTTAGAGCA ATCGGCGCAG GTGATAGAGC AAAAAGTACA AGCGATAGAA
GAGGGGCTGA TCACCACTCA GGCACAGCTC AGTGGTTTGC AGTTAGTAAA GCAGGAAATC
GTGATGACCC GCGCGGCGGT GCGAGAGGGC GCGGTTGCGG AGCTAGAGCT ATTAAAGCTT
GAGCGTGATG AGATCCGCTT GAAAGGCGAG TTATCGGCAT CGAAGGCTAA CGGTCGTCAA
CTACGTGCGG CGCAGAATCA AGCCGAAGCT GAGTATCTCA CCGTGGCTTT AGACTTCTTA
AGCCGTGCGG AAGCCGAGCG TAATGAAGTG ATTAATGAAC TCAATGCCCT CACCGAGAGC
ATCAAAACCC TTGCCGATCG CTTGGCTAGA ACTCAAATTG TTTCACCTAT CAATGGCAAT
GTGACCAATA TCTTAGTGCG TTCCATTGGT GCGGTGGTTG AGCCAGGCGA ATCAATCATG
GGCATAGTGC CTCAGGACGG CGCTTTGATC ATTGAAACTC GAATCGCCCC CAAAGACATC
GCCTTTGTGC ACACTGGGCT GCAGGCAACC GTTAAATTTA CCGCCTATGA CTTCGTGATA
TATGGCGGCC TCAAAGGTGA GGTGATCTAT GTGAGCCCGG ATGCTCAACA GCTAGATGAC
GGCACCACCT ATTTCGAAGC CCATATAAAA ACAGAAGAAA ACGTACTCAA TGGCTGGCCG
ATTATTTCAG GAATGCAAGC CAGTACCGAC ATATTAACCG GTGAGAAAAC CGTTTTAAAT
TATTGGCTAA AGCCTCTATT ACGCGCTAAA GCAAATGCAC TTCGCGAACC ATAA
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| Protein sequence | MSGRLHIKHL EGAKRANQLI FLVAALIVVT LVWASFAKLE EVVVGEGMVV PTLAVQQIES
LDGGILKQVL VREGQSVSAG EPLLLLDELR FASAYDEANI QAAALKRQKA RLDAEISSVV
IDDAASYWRD KVLIKPKAIS ALDVSVSTRS KAIYRSRLSQ LSSQLEQSAQ VIEQKVQAIE
EGLITTQAQL SGLQLVKQEI VMTRAAVREG AVAELELLKL ERDEIRLKGE LSASKANGRQ
LRAAQNQAEA EYLTVALDFL SRAEAERNEV INELNALTES IKTLADRLAR TQIVSPINGN
VTNILVRSIG AVVEPGESIM GIVPQDGALI IETRIAPKDI AFVHTGLQAT VKFTAYDFVI
YGGLKGEVIY VSPDAQQLDD GTTYFEAHIK TEENVLNGWP IISGMQASTD ILTGEKTVLN
YWLKPLLRAK ANALREP
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