| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_4168 |
|---|
| Symbol | |
|---|
| ID | 5664552 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 5059501 |
|---|
| End bp | 5061033 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641238832 |
|---|
| Product | histidine ammonia-lyase |
|---|
| Protein accession | YP_001504013 |
|---|
| Protein GI | 157963979 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2986] Histidine ammonia-lyase |
|---|
| TIGRFAM ID | [TIGR01225] histidine ammonia-lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCATT TAGTATTAAC TCCGGGTACC TTAACCCTAG CGCAAATCCG TGAAATCAGC
CGTGGCAAGG TCACTTTAGA GCTGGCCGAA AGTGCTATCG CAGATATCAA CACTAGCGCA
GGCCTAGTGC AGCAAGTATT GGATGAAGGC CGCACTGTTT ACGGTATCAA CACAGGTTTT
GGGTTGCTCG CTAACACTAA GATTGCCGCC GACGATCTGC AATTGTTGCA GCGCTCAATC
GTACTGTCTC ATGCAGCGGG TACCGGCCAA TATATGCAAG ACGCCACCGT GCGTTTGATG
ATGGTATTGA AGATCAACTC CCTAAGCCGT GGTTTCTCGG GCATTCGTTT AGAGGTGATC
AACTTCCTTA TCGCCTTGGT TAACGCGGGT GTTTATCCAT GTGTACCAGA GAAAGGCTCT
GTAGGGGCTT CGGGTGACCT CGCGCCGCTA TCACACATGT GTTTGCCGCT GCTTGGCGAA
GGCGAGATGA GCTATCAAGG TCAGCTCATC AGCGCGGCTG AGGGCCTCGA AATTGCAGGC
CTTAAGCCTA TCGAATTGGC CGCGAAAGAA GGTCTAGCGC TACTTAACGG CACGCAAGCG
TCAACGGCTT TAGCCCTTGA AGGCCTATTT AACGCAGAAG ATCTGTTTGC CGCAAGCTCG
GTAATCGGTG CCATGAGCGT TGAAGCGGCC ATGGGCAGTC GTAGCCCGTT TGACCCACGT
ATTCACGCGG CTCGCGGGCA AAAAGGTCAA ATCGATTCGG CAGCGGTGTT CCGTCATTTA
CTGGGTGGTG AGTCTGAGAT TAGCCTAGAT CACGTCAACT GTGAAAAGGT GCAAGATCCA
TATTCACTGC GCTGTCAGCC ACAGGTGCTC GGCGCATGTT TGACTCAAAT TCGTCATGCG
GCCGAAGTGC TAGGCACAGA AGCAAACGGC GTTACCGATA ATCCATTAGT GTTCCAAGAC
ACGGGCGACA TTATCTCGGG CGGTAACTTT CACGCCGAAC CTGTTGCCAT GGCGGCTGAT
AACTTGGCGA TTGCCATTGC AGAATTGGGC TCGATTGCAG AACGTCGTAT TGCGCTGCTT
ATCGACTCTA ACCTGTCTAA GCTACCGCCA TTCTTGGTGG AAAACGGCGG GGTAAACTCA
GGCTTTATGA TTGCCCAGGT AACAGCGGCG GCATTGGCCT CTGAGAACAA GACCTACGCC
CACCCAGCCT CGGTAGATAG TTTGCCAACA TCGGCTAACC AAGAAGATCA CGTGTCTATG
GCGACCTTCG CGGCGCGTCG TTTACGCGAT ATGTCTGAAA ACACCCGTGG GGTTTTAGCG
GTTGAGCTAT TGGCTGCGGC GCAGGGGTTA GATTTCCGTG CGCCACTACA ACCTAGCAAG
GCTGTGGCAC AGGCCAAAGG CGAGTTACGT GAGCTAGTGA GTTACTACGA TAAGGACCGT
TTCTTCGGCC CAGATATCGA AGCGGCGACT GACCTACTGC TAACGGCAAG CTATAACGCT
TACCTGCCAG CAGAGATCTT GCCAAGCCTA TAG
|
|---|
| Protein sequence | MSHLVLTPGT LTLAQIREIS RGKVTLELAE SAIADINTSA GLVQQVLDEG RTVYGINTGF
GLLANTKIAA DDLQLLQRSI VLSHAAGTGQ YMQDATVRLM MVLKINSLSR GFSGIRLEVI
NFLIALVNAG VYPCVPEKGS VGASGDLAPL SHMCLPLLGE GEMSYQGQLI SAAEGLEIAG
LKPIELAAKE GLALLNGTQA STALALEGLF NAEDLFAASS VIGAMSVEAA MGSRSPFDPR
IHAARGQKGQ IDSAAVFRHL LGGESEISLD HVNCEKVQDP YSLRCQPQVL GACLTQIRHA
AEVLGTEANG VTDNPLVFQD TGDIISGGNF HAEPVAMAAD NLAIAIAELG SIAERRIALL
IDSNLSKLPP FLVENGGVNS GFMIAQVTAA ALASENKTYA HPASVDSLPT SANQEDHVSM
ATFAARRLRD MSENTRGVLA VELLAAAQGL DFRAPLQPSK AVAQAKGELR ELVSYYDKDR
FFGPDIEAAT DLLLTASYNA YLPAEILPSL
|
|---|
| |