Gene Spea_4113 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_4113 
Symbol 
ID5664497 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand- 
Start bp4998961 
End bp5000067 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content51% 
IMG OID641238777 
ProductABC transporter related 
Protein accessionYP_001503958 
Protein GI157963924 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.951413 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGCAAA TCGTCGCTGA TCTCTATTGC CGCATTAAAC AGGCAAAGCA TATTAAGCTC 
GATGCTGAGT TTAGCTGTAA GGCCGGAGAA GTCTTGGCGG TTGTTGGGCC CTCCGGTGGT 
GGAAAGTCAA CATTATTAAG AATGATTGCC GGGTTAACTA AACCCGAAGA CGGCGAGATC 
CGTTATGGCG ATAAGGCTTG GTTTGACGGC CCTCAGGGAA TACAGCTAAC GCCGCAGCAA 
CGACACCTTG GCTATGTGCC GCAACACTTT GGGCTGTTCC CTAATCTAAC CGCGTTAGAA 
AATGTGGTGG CGGCGCTGGA TCATATTCCT AAAGCCGAGC GAGAGTCACG GGCTAAAGAT 
TGGCTCGAGC GAGTCAACTT ACACGGTCTA CCCGATAGGT TGCCTGCGCA CCTTTCTGGC 
GGTCAACGTC AGCGCGTCGC CTTGGCAAGA GCACTGGCCC GTGAGCCTTC GGTGTTACTG 
TTGGATGAAC CCTTTTCTGC GGTCGATAGA GAAACCCGTG AGCGACTCTA TTTAGAGTTG 
GCTCGACTCA AGGAGCAGTT GGCTATTCCG GTCGTTATGG TGACCCATGA CTTAAATGAA 
GCTATGTTGT TGGCCGACAG TATGATCTTG ATCAGTCAAG GAAAGATGTT GCAGCAAGGT 
CGTCCGCGAG AGGTGCTTAC ACGTCCACGC AATGAAGCCG TCGCTAAGCA GATGGGTCTG 
CGTAATATCT TCGATGCCTA TGTGATCGCG CAGGAAGAGG AGCGACAGAT CACTTGGCTT 
AAGTTTGGTG AACACCTGAT TGCCAGTACC TATTTTGAAA GCTTAGATGT GGGTACTAAG 
GTACGTTGGG TGATCCCAAA TCAAGGCGTA CGCTTCAATT CTATTAAGAA GGGGCGCTTG 
TGCCGCAGCT TTAATAAGCT CGATATTACC GTCGATTCAA TGTTAATCAT GGGCGAAACG 
GTGCGTGTAC TGGCAAGCGT GACAGGCGTG CAGCATAAGA TCCATGCCGA GGTGCCATTA 
TACTTGGCGC AGCAGCTGGA ATTGGCGGTA GGCACACAAA CGACTGTGGC GTTAAAGTCT 
GAGCTCATTC ATATACTGGA AAAATAG
 
Protein sequence
MSQIVADLYC RIKQAKHIKL DAEFSCKAGE VLAVVGPSGG GKSTLLRMIA GLTKPEDGEI 
RYGDKAWFDG PQGIQLTPQQ RHLGYVPQHF GLFPNLTALE NVVAALDHIP KAERESRAKD 
WLERVNLHGL PDRLPAHLSG GQRQRVALAR ALAREPSVLL LDEPFSAVDR ETRERLYLEL 
ARLKEQLAIP VVMVTHDLNE AMLLADSMIL ISQGKMLQQG RPREVLTRPR NEAVAKQMGL 
RNIFDAYVIA QEEERQITWL KFGEHLIAST YFESLDVGTK VRWVIPNQGV RFNSIKKGRL 
CRSFNKLDIT VDSMLIMGET VRVLASVTGV QHKIHAEVPL YLAQQLELAV GTQTTVALKS 
ELIHILEK