Gene Spea_4105 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_4105 
Symbol 
ID5664489 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand- 
Start bp4992251 
End bp4992916 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content45% 
IMG OID641238769 
ProductSNARE associated Golgi protein 
Protein accessionYP_001503950 
Protein GI157963916 
COG category[S] Function unknown 
COG ID[COG0398] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCGTT TTGCGAAAAT ATTATCCATC ATTACCGTGT TATCACTGGT TATATACGCG 
TTTCAACAAG GCGCGTTTGC TACCGTTGCC GATAGTAATT GGATTGCCGA CTATTTAGCC 
GAGCAGGGTG ATAAGGGGCT TGTGGTACTG TTCCTCATTG GCGCGGCTTA TACCAGTGTT 
GGTGGACCAA GACAGTTTAT GGCATTTGCC TTTGGCTTTG CATTGGGCGG TATAAAAGGC 
GCACTAATAG GTAGCCTATC CGCGCTACTT GGCTGCGTGA TCACCTTTTA TTTTGCGCGC 
TGGGTTTTTA GAAGTAGCTT AAAAAAGCGC TTTCAATCCA AATTAACGCG CTTAGAGAAT 
TTGATCATTC ACCGCACCAT ATTGAAGATG ATCATGATCC GGATCTTGCC GCTCAGCAGC 
AATTTTCTCA CTAATCTAGT GGCGGGCTCG ACCCACATAA GTGCTTGGCG CTTTTTCACC 
GGTAGCGGCA TAGGTTTTAT CCCGCAAATG ATGGTGTTTA GCTTTGCAGG AGCTGGGGTG 
GGTCTGTCTG ATAACACCAG TCTGTTAATC AGTGGTGGCC TATTTTTGTG TGCATCAATA 
ATTGCTTTTT ATCTGTATAA GACTCGGCTA AGACAGCAGA TCAGCGAGAT TATTGAAGAG 
AAATAA
 
Protein sequence
MKRFAKILSI ITVLSLVIYA FQQGAFATVA DSNWIADYLA EQGDKGLVVL FLIGAAYTSV 
GGPRQFMAFA FGFALGGIKG ALIGSLSALL GCVITFYFAR WVFRSSLKKR FQSKLTRLEN 
LIIHRTILKM IMIRILPLSS NFLTNLVAGS THISAWRFFT GSGIGFIPQM MVFSFAGAGV 
GLSDNTSLLI SGGLFLCASI IAFYLYKTRL RQQISEIIEE K