| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_4088 |
|---|
| Symbol | |
|---|
| ID | 5664472 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 4969123 |
|---|
| End bp | 4971075 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641238752 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001503933 |
|---|
| Protein GI | 157963899 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC AACAAAAAGC GCTGAAAGTA TCCACCTTAG CATTGGCAAT GAGCATGGCT
TATCAAGTGC AGGCTGATGA GATAGAACGA GACCCTATTC TTGATGTAAC AGATGTGATT
GTGGTGCATG GTGAACGTGC CTCTGTTACC GAAGCTGCAA CCACTCACTG GAGTGTAGAT
GCTGAAGAGA TCAAGGCATC AGGAGCACAG AGCTTAGATC AAGTACTTGA AAACGTCCCG
GGAATATATG TTCGAGTCGG TGGCGATTCA ACTCCGCGTG TCGATATTCG AGGCTTAAAA
ACGCGCCACA TTACCTTCTT AATTAACGGC GTGCCTGCAA GTAGCACTGA AGACGGTCAG
TTTGACCCAA GTGTTATTCC AACAAATCAA ATTGCCCGAG TTGATGTTTC TGTAGGCCCT
ACATCTGTGC TGTACGGCCC TGGCGGAAGT GCGGGTGTTA TTAACATTAT TACCAAGCAA
GGTGATGAAT CAGCTTCTCT GTCAGGTAAA GTTGAAGCCG CTGCTGACAA TACTCTGAAT
GCTGATATTA GTGCGGCGGG TTCAGGTGAC AACTGGCAAG GTATTATGAG CGTTACTCAT
CAAGAAACTG ATGGCACGCC TATGCCTGAT GATTTTGAAG ATACGCGCAA TCAAATCGGT
GATGTACGTT TTAACTCCGA CAGAAAGTTA ACTAACTATT ATGCGCAAGG CAGTTACTTT
ATCAACGATT CAACTAAGTT GATGGCTAAC TATACTCAAC GTGATGGTGA GTGGGGAAAG
TCGCCTACTG TTGACCGCAA GAAAACCCCA TCAAGAATTG AAGACTTCAA TGAGCAAAGC
ATGCAGCTTG GTGCGGCGCA TGAAATAAAC GAGAAGTATG TTGTTCGTGG TTTTGTCTAC
TATAACCAAA CAGATATGGT TGAGAACTTC TATAATCATA GATTAAATAA TTTAAATAGT
ATTGTCGAAA GTACCTCTAA AGTCAGTGGT ACGAATATTC AATTTATTAG TGAGTTTGAT
TATGGCGCTG TGTTAACCAC TTCAGCCATT GTTGAAAAGC AAGATTGGTC ATCGCATACA
ACTTCATTAC GTAACGTCGT AAAAGGCAAT GGTAGCGGTG GCGGCACTGG CGGCGGTCAA
GGCGGTTCTG GCGATATCGA TGAAAGCTTG ATGGTTTATA CCGGTGCTGC AGAGTACCAA
TATCAAGATG ACGGTAAGTA TGGCTACAGC TTAGGTGCAG CGGTACATAA TTACGATCTT
GATGTTAACA GTGAGACAGA TTTTTCAGCG CAAGCATCTG CATTTTATCA AGTTACTGAC
TCAAGCCGCA TCCATACTGG TCTGGCACGA AAAGTGCGTT ACCCATCGAT CAGCGATCTA
TACGCACCTA ACAGCGGTAA CGTGAACCTA AAAGCTGAAG TAGCTAACCA GTTTGAACTT
GGTTTACAGC AATCTTTACC TTTCGATAGT CAGTTAGATA TCAGTAGCTA TATTACTGAT
GCCAATGACT ACATTGCTAA AGATGATAAC AACCAAGAGC AAAACATTGG TGATTATCGC
TTCATGGGTG TTGATTTGCA GATGACTAAT CAATACTTCG ATAGCCTAGG GTTAACGTTT
GCCTATAGCT ATATCGATAC AGAAGATCGT GCTACCAATG AACGTTTGCA ATACCGTCCT
ACGCACAATC TGCGCTTGCA AGCGAGTTAT GACTTTTCCT TTGGTTTAAC GACGCGTTTA
AACGCTGAGC GCGTTATTGA TCAAGTGAAC GGCAAAGGTG TTCAATTAGA TAATTACACC
TTAGTCGATC TAAGTTTGAG TCAAAATATT TGGCATGACA ATTTAGAGCT ATATGTCCGA
GCTACAAACC TGTTTGATGA GCTTTATTAT CAAAGTGACT TTATGCCGCA AGCGGGTCGT
CAGGTGTTTG TCGGTATTAA CTGGCAGCTA TAG
|
|---|
| Protein sequence | MKKQQKALKV STLALAMSMA YQVQADEIER DPILDVTDVI VVHGERASVT EAATTHWSVD
AEEIKASGAQ SLDQVLENVP GIYVRVGGDS TPRVDIRGLK TRHITFLING VPASSTEDGQ
FDPSVIPTNQ IARVDVSVGP TSVLYGPGGS AGVINIITKQ GDESASLSGK VEAAADNTLN
ADISAAGSGD NWQGIMSVTH QETDGTPMPD DFEDTRNQIG DVRFNSDRKL TNYYAQGSYF
INDSTKLMAN YTQRDGEWGK SPTVDRKKTP SRIEDFNEQS MQLGAAHEIN EKYVVRGFVY
YNQTDMVENF YNHRLNNLNS IVESTSKVSG TNIQFISEFD YGAVLTTSAI VEKQDWSSHT
TSLRNVVKGN GSGGGTGGGQ GGSGDIDESL MVYTGAAEYQ YQDDGKYGYS LGAAVHNYDL
DVNSETDFSA QASAFYQVTD SSRIHTGLAR KVRYPSISDL YAPNSGNVNL KAEVANQFEL
GLQQSLPFDS QLDISSYITD ANDYIAKDDN NQEQNIGDYR FMGVDLQMTN QYFDSLGLTF
AYSYIDTEDR ATNERLQYRP THNLRLQASY DFSFGLTTRL NAERVIDQVN GKGVQLDNYT
LVDLSLSQNI WHDNLELYVR ATNLFDELYY QSDFMPQAGR QVFVGINWQL
|
|---|
| |