| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_4082 |
|---|
| Symbol | |
|---|
| ID | 5664466 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 4963119 |
|---|
| End bp | 4963832 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641238746 |
|---|
| Product | ThiJ/PfpI domain-containing protein |
|---|
| Protein accession | YP_001503927 |
|---|
| Protein GI | 157963893 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACGTA GACAGTTTAT AAAAGGGGCT TCATTGATGA TGGCCGCCAG TATTATCGCA
CCCACACTAC AGGCTAAAAC GAGTTCGCCG TTATCAGCCG CTAAAACACC GTTTACCACA
GGTAAATATC GAGTACTGGC GTTGGTATTT GATGATTACG AAACCTTAGA TCTACATGGT
CCAATAGAGA TGCTAGGCCA TATGCCAAAT ACCGAGATAA AGCTGGTGGC CGCTAAGGAG
ATTGTTAGCA GCTACCAGGG ACCGCGTGTG CTGGCTGACT GTTTAACCGA GCAAACCTAT
GACTGTGACC TACTGTTAAT TCCTGGGGGA CTGGGTACAC GAACCTTAGT TAATGACACA
GAGCTGCGCC AATGGTTAAT CGCGCAGATC GCACGTAGCC AGAATGTATT TACCATTTGT
ACAGGCACGG CATTGCTGGC AATGACCTCG GTACTCAATG ACCGTAAAGC GACTACCAAT
AAAATGGCCT ATGAATGGGT GACATCGCTG AACGATAATC CACAATGGCA GCCCAAGGCT
CGCTGGGTAT TTGATGGCAA GTTTTTAACT TCATCAGGCG TATCAGCAGG AACAGATGCG
GCACTGTTTT GGATCAAACA GCTACATGGC GATCAGGAAG CCAAGCGAAT TCAGATCCTG
ACGGAATACG ACTGGAATGA TAATCCGCAT AATGACCCCT ATGCCGTCGG TTAA
|
|---|
| Protein sequence | MQRRQFIKGA SLMMAASIIA PTLQAKTSSP LSAAKTPFTT GKYRVLALVF DDYETLDLHG
PIEMLGHMPN TEIKLVAAKE IVSSYQGPRV LADCLTEQTY DCDLLLIPGG LGTRTLVNDT
ELRQWLIAQI ARSQNVFTIC TGTALLAMTS VLNDRKATTN KMAYEWVTSL NDNPQWQPKA
RWVFDGKFLT SSGVSAGTDA ALFWIKQLHG DQEAKRIQIL TEYDWNDNPH NDPYAVG
|
|---|
| |