Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_4035 |
Symbol | caiC |
ID | 5664419 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 4899535 |
End bp | 4901088 |
Gene Length | 1554 bp |
Protein Length | 517 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 641238699 |
Product | putative crotonobetaine/carnitine-CoA ligase |
Protein accession | YP_001503880 |
Protein GI | 157963846 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.948769 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATATCG TTGGTAGCAA AACATTAAGA TGCATGTGGG AAGAGCGTGC TCGCAAATTC AGTAATAACA CAGCGTTGGT TTATGAGGAT GCTGCTGGCG ATGTCCAAGA ATATACTTAT AGTCATTTAA ATGCCGAAAT AAATAGAGCG GCAAATTTAT TCCTTAGCTT AGGAATTAAT AAAGGCGATA AAGTAGCTGT ACAGTTATAT AACAGTCCAC AATTTATTTT CTGCTGGTTT GGGTTAGCTA AGATAGGTGC GGTAATCGTG CCTATTAATA ACCAATACCT GTTTGCAGAG TGCCAATACA TTATTAATAA GTGTGCTGTT AAAGCTGTTG TTATTGAGGA AGAGTTCCTA CCCATCTATA CACGGATGAA ACAAGAAACA GATAACACAA TAAATAATAT ATTGGTTACA AGAACGACTA ACCCAGAGAT ATCGGACTCG ATGAACTTCG ATACTTTGCT AAGTCAGCAA GTTGTAGAAT TAATTCAGCG CGTGACGATT AGTAGTGACG ATGTGGCCGA AATATTATTT ACCTCAGGTA CAACATCACG GCCTAAAGGC GTGGAGATCA CCCACTGTAA CTTGCAGTTT GCAGGTTACT TTACGGCGTG GCAAACCTGC CTTCGTAGTG ATGATATTTA TTTGACCATG ATGCCAAGCT TTCACATCGA TTTTCAATGT AATGCAGCCA TGGCTACATT CACCGTTGGC GCTAAGTTAG TGATGCTTGA GAAGTACAGT GCCCGCAAGT TCTGGAAACA GATCTGTGAC TATAGAGCCA CGATTACTCA TAGCATGCCG ATGATCGTGC GTACCTTGAT GTTACAGCCT ACAACACCAT TTGAACGTGA TCATTGCCTG CGTGATATGT TGTTTTTCCT ACATATATCA GACCAAGAAA AACTGGATTT TGAAACACGC TTTAACGTGC AGCTGTTTAA CTCCTACGGG ATGACAGAAA CCTTAGTCGG ACTGATTGGT GATAGTCCAG CCGAGGAGCG TCACTGGCCG TCAATTGGAC GACCTGGGTT AGGTTATGAG GCTAAGATCG CCGATGAGAA TGGTCAAGAG CTTGCCCCGA ATGTGATTGG CGATCTCTGG GTTAAAGGTG TGCCCGGTAG AACGATCATG AAGGGCTACT ACCAAGATAC GAAAGCGACC GAGGAAGTAC TCAGTGCCGA GGGGTGGCTC TACACTGGCG ATAAGGCTTA TGTAGATGAC AATGGCTTAT TTTATTTTGT CGATAGAAAG ACAAATATGA TTAAGCGCTC CGGTGAGAAC ATCTCCAGTA GTGAAATAGA AAAAGTTTTA ATGTCTCACC CTTATATTCT CGATGCCGCA GTTATTGGTG TGCCAGATTT AATTCGAGAT GAAGCCGTTA AAGCATTTGT CATATTTAAT GAGGGTGTGT CTTTAAGTGT CGAACAAATT TTGCAGTATT GCGCTGAAAA TATGGCGAAG TTTAAAGTTC CATCTTTTGT TGAAATAAAA AAGTCTTTCC CAAGAACCTG TACCTGCAAA GTACAAAAAA AACTTCTTAT GTGA
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Protein sequence | MDIVGSKTLR CMWEERARKF SNNTALVYED AAGDVQEYTY SHLNAEINRA ANLFLSLGIN KGDKVAVQLY NSPQFIFCWF GLAKIGAVIV PINNQYLFAE CQYIINKCAV KAVVIEEEFL PIYTRMKQET DNTINNILVT RTTNPEISDS MNFDTLLSQQ VVELIQRVTI SSDDVAEILF TSGTTSRPKG VEITHCNLQF AGYFTAWQTC LRSDDIYLTM MPSFHIDFQC NAAMATFTVG AKLVMLEKYS ARKFWKQICD YRATITHSMP MIVRTLMLQP TTPFERDHCL RDMLFFLHIS DQEKLDFETR FNVQLFNSYG MTETLVGLIG DSPAEERHWP SIGRPGLGYE AKIADENGQE LAPNVIGDLW VKGVPGRTIM KGYYQDTKAT EEVLSAEGWL YTGDKAYVDD NGLFYFVDRK TNMIKRSGEN ISSSEIEKVL MSHPYILDAA VIGVPDLIRD EAVKAFVIFN EGVSLSVEQI LQYCAENMAK FKVPSFVEIK KSFPRTCTCK VQKKLLM
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