| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3988 |
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| Symbol | |
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| ID | 5664372 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 4842755 |
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| End bp | 4844677 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641238652 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001503833 |
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| Protein GI | 157963799 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTTT TTAAGCCAAA CAAAGCGGCG ACGCCGCTGA TCTGCGCATT CAGTTTTATG
CTTGTGGCTA CGCCACAACA GGCATATAGC CAAACTGCAG AAACAACATA TCAACACGCT
CAGGCCCACC AGCATGAGTC AACTTACTAC TGCCCCATGC ATCCGGAAGT GACCAGCCAT
GAGCCCGGTC GCTGCCCTGA GTGCAAGATG TTCTTAGTTA AGGACGAAGA GCAGGACAGT
TCGACTCACG ACAATCATGC AACTGTAACT AAGAGTCAAG ATTACTACTG CCCCATGCAT
CCGGAAGTGA CCAGCCACGA GCCCGGTCGC TGCCCTGAGT GCAAGATGTT CTTAGTTAAG
GATGAAGAAC AGGACAGTTC AAATCACGAC AATCATGCGG CTGTAAGCCA GAATTACTAC
TGCCCGATGC ATCCAGAAGT GACCAGCCAT GAGCCCGGTC GCTGCCCTGA GTGCAAGATG
TTCTTAGTTA AGGATGAAGA ACAGGACAGT TCAAATCACG ACAATCATGC AGCTGTCACT
AATGAGTACT ACTGCCCGAT GCATCCGGAA GTGACCAGCC ATGAGCCCGG TCGCTGCCCT
GAGTGCAAGA TGTTCTTGGT GAAAGAGGAG GAAGAGGAGT CTGTGCCTGA TGAGCACGCT
GGCCATAACC ACACGACTCA ATCGACCTCC TCAACTCAGC AGTCTCAAGC GGATAAGATC
CTAAGCCAAC CTAAGCCGAC ACTCTCGCCT GCAGCCCAGA GCAGCGGTGA TGGCAACGTA
AAATATGTTT GCCCCATGCA TCCTCACGTC GTCTCCGATG TTCCTGGCTC CTGCCCGATA
TGCGGCATGG ACCTAGAGAA AGTCACCATA GGCGGCGTAG GTGAAGAAGT GGTCGTTGGT
GTATCTGGCG GTATGCAGCA AGCATTAGGC ATGCGCAGCG AGCAAATCAC CGAAGGCACC
CTTTGGAAGC TGGTAAAAAC CATAGGCACG GTGGAGTATA ACGAAAACGC CATCGGCCAT
AGCCATACCC GCGTTAACGG CTGGATTGAA ACCTTAATGG TGCATAACGT CGGCCAGCGG
GTGAAGAAAG GCCAATTACT TTATGAGCTT TACTCTCCAG AGCTGATTAA TGCCCAAGAC
GATTATATGC AAGCGGTGGA CTATCTAACC CAAGACAAAA GCCGCGGCCA AGGCTTACTA
CGCAAGGCAC GCTTACGTCT TGAGTTACTG GGTGTGAGCT CCGACACTAT CAAGCAATTA
GAACGCACAG GTAAAACCAT CTACCGTGTG CCCTTTTATG CCGAGCAAGA TGGCTTTATC
AGCAAGCTAA CCGTACGTCA TGGCATGTAT GTGCAGCCCG GCGATACCTT GTTTGAAATC
GTCGATTTAA GCAGTGTATG GGTGATTGCC GACGTATTTG AAAATGAACA GAGCTGGCTC
GAACAGGGTC GTCCTGTAGA AGTCACCTCT GCTGCTCAAG GGCTATTCGA TCTCGAGTCG
ACTATCGACT ATATCTACCC TGAGCTTGAC CCTGTATCCC GTGCAATGCG CGTGCGGATT
AAACTAGACA ATCCCGATAA ACTGCTCAAA CCCGGTACCT TGGTCGATGT AAAACTCTTC
GGTGGCCCTA AACGTGAAGT TCTGGCGATC CCAACTGAAG CGCTTATTCT TACTGGCCGC
GAAAACCGAG TCGTAGTGCA GCGTGATGAT AACCGCTTTG CTTCTGTGCC CGTAAAAGTG
GGCATGATTG CCCAAGGCAA GGCTGAGATT ATCGAAGGCC TAAAGGTTGG CGACAAGGTA
ATTGTTTCTG GTCAGTTCTT ATTAGACTCG GAAGCCAGTA TCCAGGGTAG CTTACAGCGC
TTAAGCGGTA GCAATAGTAG CGAAAACAAT AACGCTGCTA GCGATCCACA CGCAAACCAT
TAA
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| Protein sequence | MSFFKPNKAA TPLICAFSFM LVATPQQAYS QTAETTYQHA QAHQHESTYY CPMHPEVTSH
EPGRCPECKM FLVKDEEQDS STHDNHATVT KSQDYYCPMH PEVTSHEPGR CPECKMFLVK
DEEQDSSNHD NHAAVSQNYY CPMHPEVTSH EPGRCPECKM FLVKDEEQDS SNHDNHAAVT
NEYYCPMHPE VTSHEPGRCP ECKMFLVKEE EEESVPDEHA GHNHTTQSTS STQQSQADKI
LSQPKPTLSP AAQSSGDGNV KYVCPMHPHV VSDVPGSCPI CGMDLEKVTI GGVGEEVVVG
VSGGMQQALG MRSEQITEGT LWKLVKTIGT VEYNENAIGH SHTRVNGWIE TLMVHNVGQR
VKKGQLLYEL YSPELINAQD DYMQAVDYLT QDKSRGQGLL RKARLRLELL GVSSDTIKQL
ERTGKTIYRV PFYAEQDGFI SKLTVRHGMY VQPGDTLFEI VDLSSVWVIA DVFENEQSWL
EQGRPVEVTS AAQGLFDLES TIDYIYPELD PVSRAMRVRI KLDNPDKLLK PGTLVDVKLF
GGPKREVLAI PTEALILTGR ENRVVVQRDD NRFASVPVKV GMIAQGKAEI IEGLKVGDKV
IVSGQFLLDS EASIQGSLQR LSGSNSSENN NAASDPHANH
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