| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3977 |
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| Symbol | |
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| ID | 5664361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 4832882 |
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| End bp | 4833739 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641238641 |
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| Product | RNA polymerase factor sigma-32 |
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| Protein accession | YP_001503822 |
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| Protein GI | 157963788 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000239264 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGTTC AAACGCAATC AATGGCACTA ATGGTTCCCC AAAGTAGTGG AAGCCTCGAG
TCTTATGTTC ATTCAGCACA CAACATCCCA ATGTTGGAAG CGGATAAGGA ATATGAGCTA
GCGAAGCGTC TGCAAGAAAC TGGTGACCTA CAGGCTGCGA AACAGTTGAT TATGTCGCAC
TTACGTTTTG TGGTACATGT TGCAAAAGGT TACTCTGGCT ATGGTCTTCC ACAAGCTGAC
TTGATCCAAG AAGGTAATAT CGGCCTGATG AAGGCGGTTA AGCGTTTCGA TCCAGATGTG
GGCGTTCGCT TAGTATCGTT TGCCGTGCAC TGGATTAAAG CTGAAATTCA CGAATATGTG
CTTAAAAACT GGCGCATAGT TAAAGTGGCG ACCACTAAAG CACAACGTAA GTTGTTCTTT
AACCTGCGTA AGGCTAAAAA GCGTCTAGGC TGGTTTAGCG ATAGTGAAGT GGGCATGGTA
GCTGAGAGTC TCGGTGTGTC GAAAGCCGAT GTGACCGAGA TGGAGTCACG CATGGCGGCG
CAAGATCCTG CATTTGATCT GGCTAGCGAC AACGATGATG AACAAGATTA TGCTCCTATG
CATTACCTTG AAGATCATTC ATCAGATTTA GCGTCTCAAG TTGAAAATGA CAACTGGGAA
CAGAATAACC AAGCGCGTTT GTTATCGGCT ATTAAGACTC TCGATGAGCG TAGCCAACAT
ATTCTAAAAG CGCGTTGGTT AGATGAAGAC AAGACCACAT TGCAAGATTT AGCGGCGACT
TATCAAGTGT CGGCTGAACG TATTAGGCAA TTGGAAAAGA ATGCAATGAA TAAGCTTAAA
GGCTGTATGG AAGCCTAG
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| Protein sequence | MTVQTQSMAL MVPQSSGSLE SYVHSAHNIP MLEADKEYEL AKRLQETGDL QAAKQLIMSH
LRFVVHVAKG YSGYGLPQAD LIQEGNIGLM KAVKRFDPDV GVRLVSFAVH WIKAEIHEYV
LKNWRIVKVA TTKAQRKLFF NLRKAKKRLG WFSDSEVGMV AESLGVSKAD VTEMESRMAA
QDPAFDLASD NDDEQDYAPM HYLEDHSSDL ASQVENDNWE QNNQARLLSA IKTLDERSQH
ILKARWLDED KTTLQDLAAT YQVSAERIRQ LEKNAMNKLK GCMEA
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