| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3953 |
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| Symbol | |
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| ID | 5664337 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 4806122 |
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| End bp | 4808266 |
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| Gene Length | 2145 bp |
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| Protein Length | 714 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641238617 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001503798 |
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| Protein GI | 157963764 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTGT TAACCTGGTC TGAATTGTAC CCCCGTGTAT CCTCTACAGA TCCGGCTCAT
TCCGAGCAAT TCTTGCTCTG GCAAAATGAA TCTGAATCAA CCGCTCTGGC CATATTACAG
GGGCACCACT TTCTTGCTGC CACCCCCGCA GCGCTCAATT ATTTTGAAAG CCAAGAGCAG
AACTTTATTC ATGCCACCCC CTTCGACTTC TCTCCCAGAC TGCAGTCTTC AGGAAGAAAT
AGTGTCGAGT ATGGCCAGCA AATGATAAAA AAGGCGGCCA AGGGCGAGGT CGTCTCATTG
AGTTGGTTGC ATATGAGTCA GCAAGGTAAA GAGCTGCCTA CCGTTTTAAC CCTTTACCCG
GCTCAACTCG ATAACATTAA GGTGATGATA GTCTCCTTCA AGCCTTTAGA CAGGCGAAAG
CGCAGTAGAG AGAGTATCAG TAATGGCTTT GAAACCTTGC CTAAAGAGCT GATGTCGATA
ACCCTAGAAG ACAGCGCCGA AGCCGTTTAT ATCACAGATG AAGATGATAG AATTTTGGCG
GTCAATAAGG CCATGTGCCG GATCTGTGGC TATAGTGCCG AACATTTGCT CAGTAAGACT
CCGAGCGATA TCAAGCTAGA ATTACAACAC CAAAATCAAG CACCCGATAA CCCTCTTAAA
GGCAAGGGAA GCTGGCAAGG GGAAGTTTGG AAGTGTCGCT CAGATGGTTC AACATTCCCG
GCATGGCAAA GTTGCCGACG GATCTACGCC GATAACACAG TATTTTACGT TAACTTGTTT
AGCGATATTA GTGAGAAGAA GGCGCTCGAA AACAAGCTGA CTCAACAAGC CATGTATGAC
AAGCTAACTG GGTTGCCAAA TCGTTTCCAT CTGATCCAAT TGCTCAATAA GGCGATCAAC
AACATCAAGC AATCTCCCGA CTCGATCGGC GCGCTGATGT TTTTAGATCT CAATGGTTTT
AAGAATATTA ACGACAGCTT TGGTCACTCG ACCGGAGATA AAGTCTTACA ACTCGTTGCA
GCTCGTCTCG AAGCTTGTTG TATCGAGAAT GCTGAAATCG CCCGCCTCGG TGGTGATGAG
TTCACCTTAG TCTTACCTCA GTGCCACAGC AGGCAAGAAA TTGAAGCATT TTCTGAGCTG
ATATTGTCAT TGTTTGAGGC CCCCTTCGAG ATTAATGGTC AGAAATTCTA TCTTGGCACC
AGTATTGGGA TCTCGCTATT TCCGCAGCAA AGTGACGAGC CCAATCAGCT CTTAAGCATG
GCCGACACCG CTATGTATTC GGCTAAAAAT AGCCCTAAGC ATATCCGTTT CTATAACGCG
ACCATTCGCG AAGCGGCCGA GAAAAAACTA CATACTCTAA ATGACCTACG CCACGCTCAA
AGTCTTGGCC AATTCAGTTT AGTTTATCAA AGCATTGTCG ATTTAGAATC CAATAGAACA
GTGGCAATTG AAGCTCTATT GCGCTGGAAT CAGAGTAATG GTGAGGTTAT TGAAGCCCAT
GATTTTATTC CTCTACTAGA GGAAGCTGGC CTGATGGTCA ACGTTGGCCA ATGGGCGCTA
GAACAAGCTT GCATTCAAAT GCTGAAATGG CAACAAGACT ACGACTCAGA ACTTAAAATC
AGCGTGAATA TCTCAAGATC TCAGCTAGAA CACCCAGACT TTATCTCCAT GCTTGAAGGG
TTACTGACGC GGACTTGCCT GCCTGCTAGC GCATTGATTA TTGAGATCAC CGAGAATGCT
TTTATACACA GGCCTAAATT GATGACAAAA GTCTTAGCTC AGTTAAAAGA GATGGGTATT
TGCATCACGA TTGACGACTT TGGCGCTGGA TTGTCCTCAT TAAGTCGGCT CAGCAGCTTG
CCTATCGACA GCCTGAAAAT TGATGCAGGC TTTGCCCAAC GCTTAGATTG CAATCAAGGT
CGAAAGCTTT GCAAAGCCAT TATGCAACTA GCGCAAACCT TAGAGATCAA TTTTGTTGCT
GAAGGGGTAG AAACTCAAGC CCAAAGAGAT ATGCTGTTGA GTCTAGGAAA AGGCATGGGC
CAAGGGTATT TCTATAATAG GCCAACAGCG GCTGAAAACT TTACCCATGA GGTACTCGAC
CCAATCTACG CGACAACGCA GACTAAGAAT CTAGCGGCAA GATGA
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| Protein sequence | MSLLTWSELY PRVSSTDPAH SEQFLLWQNE SESTALAILQ GHHFLAATPA ALNYFESQEQ
NFIHATPFDF SPRLQSSGRN SVEYGQQMIK KAAKGEVVSL SWLHMSQQGK ELPTVLTLYP
AQLDNIKVMI VSFKPLDRRK RSRESISNGF ETLPKELMSI TLEDSAEAVY ITDEDDRILA
VNKAMCRICG YSAEHLLSKT PSDIKLELQH QNQAPDNPLK GKGSWQGEVW KCRSDGSTFP
AWQSCRRIYA DNTVFYVNLF SDISEKKALE NKLTQQAMYD KLTGLPNRFH LIQLLNKAIN
NIKQSPDSIG ALMFLDLNGF KNINDSFGHS TGDKVLQLVA ARLEACCIEN AEIARLGGDE
FTLVLPQCHS RQEIEAFSEL ILSLFEAPFE INGQKFYLGT SIGISLFPQQ SDEPNQLLSM
ADTAMYSAKN SPKHIRFYNA TIREAAEKKL HTLNDLRHAQ SLGQFSLVYQ SIVDLESNRT
VAIEALLRWN QSNGEVIEAH DFIPLLEEAG LMVNVGQWAL EQACIQMLKW QQDYDSELKI
SVNISRSQLE HPDFISMLEG LLTRTCLPAS ALIIEITENA FIHRPKLMTK VLAQLKEMGI
CITIDDFGAG LSSLSRLSSL PIDSLKIDAG FAQRLDCNQG RKLCKAIMQL AQTLEINFVA
EGVETQAQRD MLLSLGKGMG QGYFYNRPTA AENFTHEVLD PIYATTQTKN LAAR
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